Nov 30 2023
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RELION
(REgularised LIkelihood OptimisatioN) a stand-alone computer program for Maximum A Posteriori (MAP) refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy.
Updated versions:
5.0-beta_cu10.1 | Linux 64
5.0-beta_cu11.6 | Linux 64
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Nov 28 2023
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IMOD
a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections.
Updated versions:
4.11.24 | Linux 64
4.11.24 | OS X INTEL
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Nov 22 2023
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SBGrid Installer
an application for managing an SBGrid software installation. Users can choose a subset of applications for installation on their laptops or desktops or configure site installations for clusters, servers or cloud resources. This version is the command-line interface. A graphical version is available for download on the SBGrid wiki : https://sbgrid.org/wiki/client_downloads .
Updated versions:
2.9.9 | Linux 64
2.9.9 | OS X INTEL
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Nov 21 2023
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XDSGUI Open Source
an open source build of XDSGUI.
Updated versions:
20231116 | Linux 64
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Nov 21 2023
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
12.1 | Linux 64
12.1.1 | Linux 64
11.8 | Linux 64
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Nov 21 2023
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RELION composite masks
a RELION 4 tool with support for composite masks
Updated versions:
20230531_cu11.8 | Linux 64
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Nov 21 2023
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XDSGUI Open Source
an open source build of XDSGUI.
Updated versions:
20231116 | OS X INTEL
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Nov 18 2023
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Scipion
an image processing framework to obtain 3D models of macromolecular complexes using 3D EM that allows you to execute workflows combining different software tools, while taking care of formats and conversions.
Updated versions:
20230901_2 | Linux 64
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Nov 17 2023
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
12.2.2 | Linux 64
12.2 | Linux 64
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Nov 17 2023
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R
a free software environment for statistical computing and graphics.
Updated versions:
4.2.1 | Linux 64
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Nov 15 2023
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TomoTwin-cryoet
a deep metric learning based particle picking procedure for cryo-ET
Updated versions:
0.6.1 | Linux 64
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Nov 15 2023
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ModelAngelo
an automatic atomic model building program for cryo-EM maps.
Updated versions:
1.0.7 | Linux 64
1.0.6 | Linux 64
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Nov 15 2023
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Julia
a flexible dynamic language appropriate for scientific and numerical computing with performance comparable to traditional statically-typed languages.
Updated versions:
1.9.3 | Linux 64
1.9.3 | OS X INTEL
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Nov 14 2023
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Rosetta
a software suite for modeling macromolecular structures and for predicting and designing protein structures, protein folding mechanisms, and protein-protein interactions.
Updated versions:
3.13 | OS X INTEL
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Nov 13 2023
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Amber
a suite of biomolecular simulation programs. It began in the late 1970's, and is maintained by an active development community.
Updated versions:
18 | Linux 64
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Nov 13 2023
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REINVENT
a molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design, molecule optimization, and other small molecule design tasks.
Updated versions:
4.0 | Linux 64
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Nov 13 2023
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AreTomo
(Alignment and Reconstruction for Electron Tomography) is a GPU-accelerated software package that provides an integrated solution to both fiducial-free alignment and reconstruction for cryoEM tomography.
Updated versions:
1.3.4 | Linux 64
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Nov 12 2023
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AutoGrow4
an open-source program for semi-automated computer-aided drug discovery. It uses a genetic algorithm to evolve predicted ligands on demand and so is not limited to a virtual library of pre-enumerated compounds.
Updated versions:
4.0.3 | Linux 64
4.0.3 | OS X INTEL
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Nov 05 2023
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Careless
a tool that merges crystallography data without much physics. It performs scaling, merging, and French-Wilson corrections in a single step by directly inferring structure factor amplitudes from unscaled, unmerged intensities.
Updated versions:
0.3.9_arm | OS X INTEL
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