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Webinars

Ample

    • Topic: AMPLE: a pipeline for unconventional Molecular Replacement
    Presenter: Daniel Rigden, Ph.D., Reader in Post-Genome Bioinformatics, University of Liverpool, UK

    Host: Jason Key
    Recorded on April 26, 2016

    BioGrids for SBGrid Users

    • Topic: BioGrids for SBGrid Users
    Presenter: James Vincent, Ph.D., Harvard Medical School
    Topic: BioGrids for SBGrid Users

    BioGrids in an SBGrid-style collection of ~ 500 open source bioinformatics software titles. This software stack, which includes collections for high-throughput sequencing, genomics, proteomics, visualization, image analysis, etc, is available to all SBGrid members as an add-on option, and to all users in Harvard Medical School and Boston Children's Hospital labs as part of an institutional subscription.

    Recorded on October 12, 2021
    Host: Jason Key

    BioXTAS RAW

    • Topic: Analyzing Biological Small Angle X-ray Scattering Data Using RAW
    Presenter: Jesse Hopkins, Ph.D., Postdoctoral Research, Cornell University

    For more information on RAW: https://sourceforge.net/projects/biox...

    Host: Jason Key
    Recorded on July 26, 2017

    BLEND

    • Topic: Assembling data from multiple crystals with BLEND
    Presenter: James Foadi, Postdoctoral Research Associate, Diamond Synchrotron, Oxfordshire

    Host: Jason Key
    Recorded on February 9th, 2016

    CAVER 3.0

    • Topic: CAVER 3.0: Analysis of Tunnels in Static and Dynamic Protein Structures
    Presenter: Jan Brezovsky, Ph.D., Team Leader, Loschmidt Laboratories, Czech Republic

    Host: Jason Key
    Recorded on June 13, 2013

    CCP4 Molecular Graphics (CCP4-MG)

    • Topic: The CCP4 Molecular Graphics Program
    Presenter: Stuart McNicholas, Research Fellow and CCP4-funded Developer, Dept of Chemistry, University of York

    Host: Piotr Sliz
    Recorded on January 24, 2013

    CCP4 Version 6.3.0

    • Topic: What's new in CCP4 6.3.0
    Presenter: Ronan Keegan, Ph.D., Senior Computation Scientist, CCP4 group, STFC Rutherford Appleton Laboratory

    SBGrid Host: Piotr Sliz
    Recorded on November 1, 2012

    CCP4 website: http://www.ccp4.ac.uk

    CCP-EM

    • Topic: CCP-EM: software for cryo-EM
    Presenter: Colin Palmer, PhD - Science and Technology Facilities Council

    Recorded on May 22, 2020
    Host: Shaun Rawson

    CCP-EM

    • Topic: Model building and validation in CCP-EM
    Presenter: Colin Palmer, Computational Scientist, Science & Technology Facilities Council

    Recorded on: July 23, 2019
    Host: Jason Key

    CcpNmr

    • Topic: CcpNmr Analysis Version 3: Assign & Screen
    Presenter: Vicky Higman, Ph.D., Research Fellow, University of Leicester

    Host: Jason Key
    Recorded on November 3, 2020

    cctbx.xfel

    • Topic: Processing serial crystallographic data using cctbx.xfel and DIALS
    Presenter: Aaron Brewster, Project Scientist, Lawrence Berkeley National Laboratory

    Host: Jason Key
    Recorded on January 10, 2016

    ChimeraX

    • Topic: Making Augmented Reality Videos with ChimeraX
    Presenter: Tom Goddard, University of California, San Francisco, Resource for Biocomputing, Visualization, and Informatics

    The Zoom recording of this presentation is pretty choppy. We recommend you also check out the video Tom recorded and posted on his own channel here: https://youtu.be/dKNbRRRFhqY

    Slides from talk available at https://www.rbvi.ucsf.edu/chimerax/data/sbgrid-july2020/

    Host: Pete Meyer
    Recorded on July 7, 2020

    ChimeraX

    • Topic: Movie Making for cryoEM using ChimeraX
    Presenter: Tom Goddard, Programmer/Analyst, UCSF Resource for Biocomputing, Visualization, and Informatics

    Hosted by Pete Meyer
    Recorded on April 11, 2017

    Cinderella

    • Topic: Cinderella

    Presenter: Thorsten Wagner, Post-doctoral Fellow, Max Planck Institute of Molecular Physiology


    Host: Jason Key

    Recorded on March 10, 2020

    Coot

    • Topic: What's New in Coot?

    Presenter: Paul Emsley, Ph.D., MRC Laboratory of Molecular Biology


    Recorded on February 16, 2021
    Host: Jason Key

    Coot Cryo-EM

    • Topic: Breezing Through the Coot Cryo-EM Tutorial
    Speaker: Paul Emsley - MRC Laboratory of Molecular Biology

    Recorded March 2019

    CRANK2

    • Topic: Automated macromolecular structure solution from SAD and MR-SAD experiments with Crank2
    Presenter: Navraj Pannu, Assistant Professor
    Leiden University, The Netherlands

    Host: Jason Key
    Recorded on March 8, 2016

    CryoAssess

    • Topic: CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks
    Presenter: Yilai Li, Ph.D., University of Michigan

    Recorded on February 23, 2021
    Host: Shuan Rawson

    CryoDRGN

    • Topic: CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM
    Speaker: Ellen Zhong, MIT, Laboratories of Bonnie Berger and Joey Davis

    Host: Shaun Rawson
    Recorded on: May 15, 2020

    crYOLO

    • Topic: crYOLO and its utilization in feedback guided real-time processing
    Speaker: Dr. Thorsten Wagner, Max-Planck-Institute of Molecular Physiology

    Host: Pete Meyer
    Recorded on May 29, 2020

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