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Webinars

Ample

    • Topic: AMPLE: a pipeline for unconventional Molecular Replacement
    Presenter: Daniel Rigden, Ph.D., Reader in Post-Genome Bioinformatics, University of Liverpool, UK

    Host: Jason Key
    Recorded on April 26, 2016

    BioXTAS RAW

    • Topic: Analyzing Biological Small Angle X-ray Scattering Data Using RAW
    Presenter: Jesse Hopkins, Ph.D., Postdoctoral Research, Cornell University

    For more information on RAW: https://sourceforge.net/projects/biox...

    Host: Jason Key
    Recorded on July 26, 2017

    BLEND

    • Topic: Assembling data from multiple crystals with BLEND
    Presenter: James Foadi, Postdoctoral Research Associate, Diamond Synchrotron, Oxfordshire

    Host: Jason Key
    Recorded on February 9th, 2016

    CAVER 3.0

    • Topic: CAVER 3.0: Analysis of Tunnels in Static and Dynamic Protein Structures
    Presenter: Jan Brezovsky, Ph.D., Team Leader, Loschmidt Laboratories, Czech Republic

    Host: Jason Key
    Recorded on June 13, 2013

    CCP4 Molecular Graphics (CCP4-MG)

    • Topic: The CCP4 Molecular Graphics Program
    Presenter: Stuart McNicholas, Research Fellow and CCP4-funded Developer, Dept of Chemistry, University of York

    Host: Piotr Sliz
    Recorded on January 24, 2013

    CCP4 Version 6.3.0

    • Topic: What's new in CCP4 6.3.0
    Presenter: Ronan Keegan, Ph.D., Senior Computation Scientist, CCP4 group, STFC Rutherford Appleton Laboratory

    SBGrid Host: Piotr Sliz
    Recorded on November 1, 2012

    CCP4 website: http://www.ccp4.ac.uk

    CCP-EM

    • Topic: CCP-EM: software for cryo-EM
    Presenter: Colin Palmer, PhD - Science and Technology Facilities Council

    Recorded on May 22, 2020
    Host: Shaun Rawson

    CCP-EM

    • Topic: Model building and validation in CCP-EM
    Presenter: Colin Palmer, Computational Scientist, Science & Technology Facilities Council

    Recorded on: July 23, 2019
    Host: Jason Key

    cctbx.xfel

    • Topic: Processing serial crystallographic data using cctbx.xfel and DIALS
    Presenter: Aaron Brewster, Project Scientist, Lawrence Berkeley National Laboratory

    Host: Jason Key
    Recorded on January 10, 2016

    ChimeraX

    • Topic: Making Augmented Reality Videos with ChimeraX
    Presenter: Tom Goddard, University of California, San Francisco, Resource for Biocomputing, Visualization, and Informatics

    The Zoom recording of this presentation is pretty choppy. We recommend you also check out the video Tom recorded and posted on his own channel here: https://youtu.be/dKNbRRRFhqY

    Slides from talk available at https://www.rbvi.ucsf.edu/chimerax/data/sbgrid-july2020/

    Host: Pete Meyer
    Recorded on July 7, 2020

    ChimeraX

    • Topic: Movie Making for cryoEM using ChimeraX
    Presenter: Tom Goddard, Programmer/Analyst, UCSF Resource for Biocomputing, Visualization, and Informatics

    Hosted by Pete Meyer
    Recorded on April 11, 2017

    Cinderella

    • Topic: Cinderella

    Presenter: Thorsten Wagner, Post-doctoral Fellow, Max Planck Institute of Molecular Physiology


    Host: Jason Key

    Recorded on March 10, 2020

    Coot Cryo-EM

    • Topic: Breezing Through the Coot Cryo-EM Tutorial
    Speaker: Paul Emsley - MRC Laboratory of Molecular Biology

    Recorded March 2019

    CRANK2

    • Topic: Automated macromolecular structure solution from SAD and MR-SAD experiments with Crank2
    Presenter: Navraj Pannu, Assistant Professor
    Leiden University, The Netherlands

    Host: Jason Key
    Recorded on March 8, 2016

    CryoDRGN

    • Topic: CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM
    Speaker: Ellen Zhong, MIT, Laboratories of Bonnie Berger and Joey Davis

    Host: Shaun Rawson
    Recorded on: May 15, 2020

    crYOLO

    • Topic: Fast, accurate and easy particle picking with crYOLO
    Presenter: Thorsten Wagner, Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology

    Host: Jason Key
    Recorded on: May 28, 2019

    CrystFEL

    • Topic: CrystFEL - data processing for serial crystallography
    Presenter: Thomas White, Research Scientist, Center for Free Electron Laser Science, DESY, Hamburg, Germany

    Host: Jason Key
    Date Recorded July 14, 2015

    DENSS: Ab Initio Electron Density Maps from Biological SAXS Data

    • Topic: DENSS: Ab Initio Electron Density Maps from Biological SAXS Data
    Presenter: Thomas Grant, Ph.D., Research Assistant Professor, University of Buffalo, Hauptman-Woodward Institute

    Host: Jason Key
    Recorded on: January 22, 2019

    Summary: SAXS is an experimental technique used to analyze the molecular structures of a wide variety of biological and non-biological samples in solution. Here I present a method for calculating electron density maps directly from solution scattering data. After introducing the approach, I will demonstrate a brief tutorial of the software DENSS (DENsity from Solution Scattering).

    DIALS

    • Topic: DIALS
    Presenter: Graeme Winter, Scientist, Diamond Light Source

    Host: Jason Key
    Recorded on November 17, 2015

    DireX

    • Topic: DireX - Cross-validated Real-space Refinement to Density Map
    Presenter: Gunnar Schröder, PhD, Assistant Professor, University of Düsseldorf, Jülich, Germany

    Host: Pete Meyer
    Recorded on May 10, 2016

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