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SBGridTV

Webinars

Ample

  • Topic: AMPLE: a pipeline for unconventional Molecular Replacement
    Presenter: Daniel Rigden, Ph.D., Reader in Post-Genome Bioinformatics, University of Liverpool, UK

    Host: Jason Key
    Recorded on April 26, 2016

    A Practical Guide to NCBI BLAST

  • NCBI BLAST: Learn about accessing from the Entrez sequence databases; the new genome BLAST service quick finder; organism limits and other filters; formatting options and downloading options; and TreeView displays.

    Presented April 29, 2016.

    Get video updates, subscribe to the NCBI YouTube channel:
    www.youtube.com/ncbinlm

    BioXTAS RAW

  • Topic: Analyzing Biological Small Angle X-ray Scattering Data Using RAW
    Presenter: Jesse Hopkins, Ph.D., Postdoctoral Research, Cornell University

    For more information on RAW: https://sourceforge.net/projects/biox...

    Host: Jason Key
    Recorded on July 26, 2017

    BLEND

  • Topic: Assembling data from multiple crystals with BLEND
    Presenter: James Foadi, Postdoctoral Research Associate, Diamond Synchrotron, Oxfordshire

    Host: Jason Key
    Recorded on February 9th, 2016

    CAVER 3.0

  • Topic: CAVER 3.0: Analysis of Tunnels in Static and Dynamic Protein Structures
    Presenter: Jan Brezovsky, Ph.D., Team Leader, Loschmidt Laboratories, Czech Republic

    Host: Jason Key
    Recorded on June 13, 2013

    CCP4 Molecular Graphics (CCP4-MG)

  • Topic: The CCP4 Molecular Graphics Program
    Presenter: Stuart McNicholas, Research Fellow and CCP4-funded Developer, Dept of Chemistry, University of York

    Host: Piotr Sliz
    Recorded on January 24, 2013

    CCP4 Version 6.3.0

  • Topic: What's new in CCP4 6.3.0
    Presenter: Ronan Keegan, Ph.D., Senior Computation Scientist, CCP4 group, STFC Rutherford Appleton Laboratory

    SBGrid Host: Piotr Sliz
    Recorded on November 1, 2012

    CCP4 website: http://www.ccp4.ac.uk

    cctbx.xfel

  • Topic: Processing serial crystallographic data using cctbx.xfel and DIALS
    Presenter: Aaron Brewster, Project Scientist, Lawrence Berkeley National Laboratory

    Host: Jason Key
    Recorded on January 10, 2016

    ChimeraX

  • Topic: Movie Making for cryoEM using ChimeraX
    Presenter: Tom Goddard, Programmer/Analyst, UCSF Resource for Biocomputing, Visualization, and Informatics

    Hosted by Pete Meyer
    Recorded on April 11, 2017

    CRANK2

  • Topic: Automated macromolecular structure solution from SAD and MR-SAD experiments with Crank2
    Presenter: Navraj Pannu, Assistant Professor
    Leiden University, The Netherlands

    Host: Jason Key
    Recorded on March 8, 2016

    CrystFEL

  • Topic: CrystFEL - data processing for serial crystallography
    Presenter: Thomas White, Research Scientist, Center for Free Electron Laser Science, DESY, Hamburg, Germany

    Host: Jason Key
    Date Recorded July 14, 2015

    DIALS

  • Topic: DIALS
    Presenter: Graeme Winter, Scientist, Diamond Light Source

    Host: Jason Key
    Recorded on November 17, 2015

    DireX

  • Topic: DireX - Cross-validated Real-space Refinement to Density Map
    Presenter: Gunnar Schröder, PhD, Assistant Professor, University of Düsseldorf, Jülich, Germany

    Host: Pete Meyer
    Recorded on May 10, 2016

    Dock

  • Topic: DOCK: Where it is and where its going
    Presenter: Trent Balius, Ph.D. , Postdoctoral Scholar, Shoichet Lab, University of California, San Francisco

    Recorded on June 20, 2017
    Host: Jason Key

    DSSR

  • Topic: DSSR, a new 3DNA program for Defining the Secondary Structures of RNA from three-dimensional coordinates
    Presenter: Xiang-Jun Lu, Ph.D., Associate Research Scientist, Columbia University

    Host: Jason Key
    Recorded on June 26, 2014

    EMAN2.1

  • Topic: A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis
    Presenter: Steven Ludtke, Ph.D., Professor, Baylor College of Medicine

    Host: Jason Key
    Recorded on April 15, 2015

    EMAN2.2

  • Topic: EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
    Presenter: Steven Ludtke, Ph.D.
    Professor of Biochemistry - Baylor College of Medicine
    Co-Director - National Center for Macromolecular Imaging
    Co-Director - Center for Computational and Integrative Biomedical Research

    Date Recorded: November 14, 2017
    Host: Jason Key

    Geneious

  • Topic: Geneious (Custom BLAST, workflow builder, annotation tools, CRISPER tools)
    Presenter: Christian Olsen, Field Application Scientist at
    Biomatters, Inc

    Host: Jason Key
    Recorded on July 26, 2016

    Geneious R7

  • Topic: Geneious R7: Sequence Analysis Tool for Biologists
    Presenter: Christian Olsen, Biomatters, Inc.

    Host: Jason Key
    Recorded on Sept 9th, 2014

    Geneious R7 (part II)

  • Topic: Geneious R7: Molecular Cloning Tools for Biologists
    Presenter: Christian Olsen, Biomatters, Inc.

    Host: Jason Key
    Recorded on September 30, 2014

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