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SBGridTV

Webinars

Ample

  • Topic: AMPLE: a pipeline for unconventional Molecular Replacement
    Presenter: Daniel Rigden, Ph.D., Reader in Post-Genome Bioinformatics, University of Liverpool, UK

    Host: Jason Key
    Recorded on April 26, 2016

    BioXTAS RAW

  • Topic: Analyzing Biological Small Angle X-ray Scattering Data Using RAW
    Presenter: Jesse Hopkins, Ph.D., Postdoctoral Research, Cornell University

    For more information on RAW: https://sourceforge.net/projects/biox...

    Host: Jason Key
    Recorded on July 26, 2017

    BLEND

  • Topic: Assembling data from multiple crystals with BLEND
    Presenter: James Foadi, Postdoctoral Research Associate, Diamond Synchrotron, Oxfordshire

    Host: Jason Key
    Recorded on February 9th, 2016

    CAVER 3.0

  • Topic: CAVER 3.0: Analysis of Tunnels in Static and Dynamic Protein Structures
    Presenter: Jan Brezovsky, Ph.D., Team Leader, Loschmidt Laboratories, Czech Republic

    Host: Jason Key
    Recorded on June 13, 2013

    CCP4 Molecular Graphics (CCP4-MG)

  • Topic: The CCP4 Molecular Graphics Program
    Presenter: Stuart McNicholas, Research Fellow and CCP4-funded Developer, Dept of Chemistry, University of York

    Host: Piotr Sliz
    Recorded on January 24, 2013

    CCP4 Version 6.3.0

  • Topic: What's new in CCP4 6.3.0
    Presenter: Ronan Keegan, Ph.D., Senior Computation Scientist, CCP4 group, STFC Rutherford Appleton Laboratory

    SBGrid Host: Piotr Sliz
    Recorded on November 1, 2012

    CCP4 website: http://www.ccp4.ac.uk

    CCP-EM

  • Topic: Model building and validation in CCP-EM
    Presenter: Colin Palmer, Computational Scientist, Science & Technology Facilities Council

    Recorded on: July 23, 2019
    Host: Jason Key

    cctbx.xfel

  • Topic: Processing serial crystallographic data using cctbx.xfel and DIALS
    Presenter: Aaron Brewster, Project Scientist, Lawrence Berkeley National Laboratory

    Host: Jason Key
    Recorded on January 10, 2016

    ChimeraX

  • Topic: Movie Making for cryoEM using ChimeraX
    Presenter: Tom Goddard, Programmer/Analyst, UCSF Resource for Biocomputing, Visualization, and Informatics

    Hosted by Pete Meyer
    Recorded on April 11, 2017

    Coot Cryo-EM

  • Topic: Breezing Through the Coot Cryo-EM Tutorial
    Speaker: Paul Emsley - MRC Laboratory of Molecular Biology

    Recorded March 2019

    CRANK2

  • Topic: Automated macromolecular structure solution from SAD and MR-SAD experiments with Crank2
    Presenter: Navraj Pannu, Assistant Professor
    Leiden University, The Netherlands

    Host: Jason Key
    Recorded on March 8, 2016

    crYOLO

  • Topic: Fast, accurate and easy particle picking with crYOLO
    Presenter: Thorsten Wagner, Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology

    Host: Jason Key
    Recorded on: May 28, 2019

    CrystFEL

  • Topic: CrystFEL - data processing for serial crystallography
    Presenter: Thomas White, Research Scientist, Center for Free Electron Laser Science, DESY, Hamburg, Germany

    Host: Jason Key
    Date Recorded July 14, 2015

    DENSS: Ab Initio Electron Density Maps from Biological SAXS Data

  • Topic: DENSS: Ab Initio Electron Density Maps from Biological SAXS Data
    Presenter: Thomas Grant, Ph.D., Research Assistant Professor, University of Buffalo, Hauptman-Woodward Institute

    Host: Jason Key
    Recorded on: January 22, 2019

    Summary: SAXS is an experimental technique used to analyze the molecular structures of a wide variety of biological and non-biological samples in solution. Here I present a method for calculating electron density maps directly from solution scattering data. After introducing the approach, I will demonstrate a brief tutorial of the software DENSS (DENsity from Solution Scattering).

    DIALS

  • Topic: DIALS
    Presenter: Graeme Winter, Scientist, Diamond Light Source

    Host: Jason Key
    Recorded on November 17, 2015

    DireX

  • Topic: DireX - Cross-validated Real-space Refinement to Density Map
    Presenter: Gunnar Schröder, PhD, Assistant Professor, University of Düsseldorf, Jülich, Germany

    Host: Pete Meyer
    Recorded on May 10, 2016

    Dock

  • Topic: DOCK: Where it is and where its going
    Presenter: Trent Balius, Ph.D. , Postdoctoral Scholar, Shoichet Lab, University of California, San Francisco

    Recorded on June 20, 2017
    Host: Jason Key

    DSSR

  • Topic: DSSR, a new 3DNA program for Defining the Secondary Structures of RNA from three-dimensional coordinates
    Presenter: Xiang-Jun Lu, Ph.D., Associate Research Scientist, Columbia University

    Host: Jason Key
    Recorded on June 26, 2014

    EMAN2.1

  • Topic: A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis
    Presenter: Steven Ludtke, Ph.D., Professor, Baylor College of Medicine

    Host: Jason Key
    Recorded on April 15, 2015

    EMAN2.2

  • Topic: EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
    Presenter: Steven Ludtke, Ph.D.
    Professor of Biochemistry - Baylor College of Medicine
    Co-Director - National Center for Macromolecular Imaging
    Co-Director - Center for Computational and Integrative Biomedical Research

    Date Recorded: November 14, 2017
    Host: Jason Key

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