Webinars
Topic: Breezing Through the Coot Cryo-EM Tutorial
Speaker: Paul Emsley - MRC Laboratory of Molecular Biology
Recorded March 2019
Topic: Automated macromolecular structure solution from SAD and MR-SAD experiments with Crank2
Presenter: Navraj Pannu, Assistant Professor
Leiden University, The Netherlands
Host: Jason Key
Recorded on March 8, 2016
Topic: CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks
Presenter: Yilai Li, Ph.D., University of Michigan
Recorded on February 23, 2021
Host: Shuan Rawson
Topic: CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM
Speaker: Ellen Zhong, MIT, Laboratories of Bonnie Berger and Joey Davis
Host: Shaun Rawson
Recorded on: May 15, 2020
Topic: crYOLO and its utilization in feedback guided real-time processing
Speaker: Dr. Thorsten Wagner, Max-Planck-Institute of Molecular Physiology
Host: Pete Meyer
Recorded on May 29, 2020
Topic: Fast, accurate and easy particle picking with crYOLO
Presenter: Thorsten Wagner, Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology
Host: Jason Key
Recorded on: May 28, 2019
Topic: CrystFEL - data processing for serial crystallography
Presenter: Thomas White, Research Scientist, Center for Free Electron Laser Science, DESY, Hamburg, Germany
Host: Jason Key
Date Recorded July 14, 2015
Topic: Structural insights into SARS-CoV-2 S and implications for therapeutic development
Presenter: Daniel Wrapp, Dartmouth graduate student, Jason McLellan's lab at The University of Texas at Austin
Host: Shaun Rawson
Recorded on September 22, 2020
Topic: DeepEMhancer: exploiting previous knowledge to enhance map visualization
Presenter: Rubén Sánchez Garcia, Ph.D., The National Centre for Biotechnolgy, Spanish National Research Council
Host: Pete Meyer
Recorded on January 26, 2021
Topic: DENSS: Ab Initio Electron Density Maps from Biological SAXS Data
Presenter: Thomas Grant, Ph.D., Research Assistant Professor, University of Buffalo, Hauptman-Woodward Institute
Host: Jason Key
Recorded on: January 22, 2019
Summary: SAXS is an experimental technique used to analyze the molecular structures of a wide variety of biological and non-biological samples in solution. Here I present a method for calculating electron density maps directly from solution scattering data. After introducing the approach, I will demonstrate a brief tutorial of the software DENSS (DENsity from Solution Scattering).
Topic: DIALS
Presenter: Graeme Winter, Scientist, Diamond Light Source
Host: Jason Key
Recorded on November 17, 2015
Topic: DireX - Cross-validated Real-space Refinement to Density Map
Presenter: Gunnar Schröder, PhD, Assistant Professor, University of Düsseldorf, Jülich, Germany
Host: Pete Meyer
Recorded on May 10, 2016
Topic: DOCK: Where it is and where its going
Presenter: Trent Balius, Ph.D. , Postdoctoral Scholar, Shoichet Lab, University of California, San Francisco
Recorded on June 20, 2017
Host: Jason Key
Topic: Structural and mechanistic insights into the RAS biology
Presenter: Dr. Dhirendra Simanshu, NCI RAS Initiative, Frederick National Laboratory for Cancer Research
Host: Pete Meyer
Recorded on April 20, 2021
Topic: DSSR, a new 3DNA program for Defining the Secondary Structures of RNA from three-dimensional coordinates
Presenter: Xiang-Jun Lu, Ph.D., Associate Research Scientist, Columbia University
Host: Jason Key
Recorded on June 26, 2014
Topic: The Dynamo package for cryoET data processing: from tilt series alignment to subtomogram averaging
Presenter: Daniel Castaño Díez, Ph.D., Biozentrum, University of Basel
Host: Shaun Rawson
Recorded on June 8, 2021
Topic: Effective on-the-fly and downstream processing of CryoEM data
Presenter: Shaun Rawson, Ph.D., Harvard Medical School
Q&A session includes Tom Goddard, who also presented during this session on "Using AlphaFold protein structures in ChimeraX for cryoEM modeling." See https://youtu.be/QaqQgOEBH6E
This talk was presented as part of the SBGrid Australasian III Mini-series - CryoEM: from Sample to Structure and should appeal to both novice and expert structural biologists.
See the full mini-series lineup at https://sbgrid.org/news/sbgrid-university-otago-webinar-series.
Topic: In-situ and in-vitro subtomogram averaging to subnanometer resolution using EMAN2.3
Presenter: Steven J Ludtke, Ph.D., Professor, Baylor College of Medicine
Recorded on November 12, 2019
Host: Jason Key
Topic: EMAN2
Presenter: Steven Ludtke, Ph.D. Baylor College of Medicine
Host: Jason Key
Recorded on May 11, 2021
Topic: A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis
Presenter: Steven Ludtke, Ph.D., Professor, Baylor College of Medicine
Host: Jason Key
Recorded on April 15, 2015