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SBGridTV

Webinars

CRANK2

  • Topic: Automated macromolecular structure solution from SAD and MR-SAD experiments with Crank2
    Presenter: Navraj Pannu, Assistant Professor
    Leiden University, The Netherlands

    Host: Jason Key
    Recorded on March 8, 2016

    CryoAssess

  • Topic: CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks
    Presenter: Yilai Li, Ph.D., University of Michigan

    Recorded on February 23, 2021
    Host: Shuan Rawson

    CryoDRGN

  • Topic: CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM
    Speaker: Ellen Zhong, MIT, Laboratories of Bonnie Berger and Joey Davis

    Host: Shaun Rawson
    Recorded on: May 15, 2020

    crYOLO

  • Topic: crYOLO and its utilization in feedback guided real-time processing
    Speaker: Dr. Thorsten Wagner, Max-Planck-Institute of Molecular Physiology

    Host: Pete Meyer
    Recorded on May 29, 2020

    crYOLO

  • Topic: Fast, accurate and easy particle picking with crYOLO
    Presenter: Thorsten Wagner, Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology

    Host: Jason Key
    Recorded on: May 28, 2019

    CrystFEL

  • Topic: CrystFEL - data processing for serial crystallography
    Presenter: Thomas White, Research Scientist, Center for Free Electron Laser Science, DESY, Hamburg, Germany

    Host: Jason Key
    Date Recorded July 14, 2015

    Daniel Wrapp - Structural insights into SARS-CoV-2 S and implications for therapeutic development

  • Topic: Structural insights into SARS-CoV-2 S and implications for therapeutic development
    Presenter: Daniel Wrapp, Dartmouth graduate student, Jason McLellan's lab at The University of Texas at Austin

    Host: Shaun Rawson
    Recorded on September 22, 2020

    DeepEMhancer

  • Topic: DeepEMhancer: exploiting previous knowledge to enhance map visualization
    Presenter: Rubén Sánchez Garcia, Ph.D., The National Centre for Biotechnolgy, Spanish National Research Council


    Host: Pete Meyer
    Recorded on January 26, 2021

    DENSS: Ab Initio Electron Density Maps from Biological SAXS Data

  • Topic: DENSS: Ab Initio Electron Density Maps from Biological SAXS Data
    Presenter: Thomas Grant, Ph.D., Research Assistant Professor, University of Buffalo, Hauptman-Woodward Institute

    Host: Jason Key
    Recorded on: January 22, 2019

    Summary: SAXS is an experimental technique used to analyze the molecular structures of a wide variety of biological and non-biological samples in solution. Here I present a method for calculating electron density maps directly from solution scattering data. After introducing the approach, I will demonstrate a brief tutorial of the software DENSS (DENsity from Solution Scattering).

    DIALS

  • Topic: DIALS
    Presenter: Graeme Winter, Scientist, Diamond Light Source

    Host: Jason Key
    Recorded on November 17, 2015

    DireX

  • Topic: DireX - Cross-validated Real-space Refinement to Density Map
    Presenter: Gunnar Schröder, PhD, Assistant Professor, University of Düsseldorf, Jülich, Germany

    Host: Pete Meyer
    Recorded on May 10, 2016

    Dock

  • Topic: DOCK: Where it is and where its going
    Presenter: Trent Balius, Ph.D. , Postdoctoral Scholar, Shoichet Lab, University of California, San Francisco

    Recorded on June 20, 2017
    Host: Jason Key

    Dr. Dhirendra Simanshu - Structural and mechanistic insights into the RAS biology

  • Topic: Structural and mechanistic insights into the RAS biology

    Presenter: Dr. Dhirendra Simanshu, NCI RAS Initiative, Frederick National Laboratory for Cancer Research




    Host: Pete Meyer

    Recorded on April 20, 2021

    DSSR

  • Topic: DSSR, a new 3DNA program for Defining the Secondary Structures of RNA from three-dimensional coordinates
    Presenter: Xiang-Jun Lu, Ph.D., Associate Research Scientist, Columbia University

    Host: Jason Key
    Recorded on June 26, 2014

    Dynamo

  • Topic: The Dynamo package for cryoET data processing: from tilt series alignment to subtomogram averaging

    Presenter: Daniel Castaño Díez, Ph.D., Biozentrum, University of Basel

    Host: Shaun Rawson

    Recorded on June 8, 2021

    Effective on-the-fly and downstream processing of CryoEM data

  • Topic: Effective on-the-fly and downstream processing of CryoEM data

    Presenter: Shaun Rawson, Ph.D., Harvard Medical School

    Q&A session includes Tom Goddard, who also presented during this session on "Using AlphaFold protein structures in ChimeraX for cryoEM modeling." See https://youtu.be/QaqQgOEBH6E

    This talk was presented as part of the SBGrid Australasian III Mini-series - CryoEM: from Sample to Structure and should appeal to both novice and expert structural biologists.
    See the full mini-series lineup at https://sbgrid.org/news/sbgrid-university-otago-webinar-series.

    EMAN2

  • Topic: In-situ and in-vitro subtomogram averaging to subnanometer resolution using EMAN2.3
    Presenter: Steven J Ludtke, Ph.D., Professor, Baylor College of Medicine

    Recorded on November 12, 2019
    Host: Jason Key

    EMAN2

  • Topic: EMAN2
    Presenter: Steven Ludtke, Ph.D. Baylor College of Medicine


    Host: Jason Key
    Recorded on May 11, 2021

    EMAN2.1

  • Topic: A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis
    Presenter: Steven Ludtke, Ph.D., Professor, Baylor College of Medicine

    Host: Jason Key
    Recorded on April 15, 2015

    EMAN2.2

  • Topic: EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
    Presenter: Steven Ludtke, Ph.D.
    Professor of Biochemistry - Baylor College of Medicine
    Co-Director - National Center for Macromolecular Imaging
    Co-Director - Center for Computational and Integrative Biomedical Research

    Date Recorded: November 14, 2017
    Host: Jason Key

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