Webinars
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Topic: BioGrids for SBGrid Users
Presenter: James Vincent, Ph.D., Harvard Medical School
Topic: BioGrids for SBGrid Users
BioGrids in an SBGrid-style collection of ~ 500 open source bioinformatics software titles. This software stack, which includes collections for high-throughput sequencing, genomics, proteomics, visualization, image analysis, etc, is available to all SBGrid members as an add-on option, and to all users in Harvard Medical School and Boston Children's Hospital labs as part of an institutional subscription.
Recorded on October 12, 2021
Host: Jason Key
Topic: BioXTAS RAW: An open-source program for bioSAS data analysis.
Presenter: Jesse Hopkins, Ph.D., Deputy Director, BioCAT Sector 18, Advanced Photon Source
Recorded on Jan 18, 2022
Host: Pete Meyer
Topic: Analyzing Biological Small Angle X-ray Scattering Data Using RAW
Presenter: Jesse Hopkins, Ph.D., Postdoctoral Research, Cornell University
For more information on RAW: https://sourceforge.net/projects/biox...
Host: Jason Key
Recorded on July 26, 2017
Topic: Model building and validation in CCP-EM
Presenter: Colin Palmer, Computational Scientist, Science & Technology Facilities Council
Recorded on: July 23, 2019
Host: Jason Key
Topic: Fast, accurate and easy particle picking with crYOLO
Presenter: Thorsten Wagner, Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology
Host: Jason Key
Recorded on: May 28, 2019
Topic: Structural insights into SARS-CoV-2 S and implications for therapeutic development
Presenter: Daniel Wrapp, Dartmouth graduate student, Jason McLellan's lab at The University of Texas at Austin
Host: Shaun Rawson
Recorded on September 22, 2020
Topic: DENSS: Ab Initio Electron Density Maps from Biological SAXS Data
Presenter: Thomas Grant, Ph.D., Research Assistant Professor, University of Buffalo, Hauptman-Woodward Institute
Host: Jason Key
Recorded on: January 22, 2019
Summary: SAXS is an experimental technique used to analyze the molecular structures of a wide variety of biological and non-biological samples in solution. Here I present a method for calculating electron density maps directly from solution scattering data. After introducing the approach, I will demonstrate a brief tutorial of the software DENSS (DENsity from Solution Scattering).
Topic: Structural and mechanistic insights into the RAS biology
Presenter: Dr. Dhirendra Simanshu, NCI RAS Initiative, Frederick National Laboratory for Cancer Research
Host: Pete Meyer
Recorded on April 20, 2021
Topic: Effective on-the-fly and downstream processing of CryoEM data
Presenter: Shaun Rawson, Ph.D., Harvard Medical School
Q&A session includes Tom Goddard, who also presented during this session on "Using AlphaFold protein structures in ChimeraX for cryoEM modeling." See https://youtu.be/QaqQgOEBH6E
This talk was presented as part of the SBGrid Australasian III Mini-series - CryoEM: from Sample to Structure and should appeal to both novice and expert structural biologists.
See the full mini-series lineup at https://sbgrid.org/news/sbgrid-university-otago-webinar-series.
Topic: Simple Ways to Enhance the Success of Crystallization Trials: Part III - Choosing your Method of Crystallization
Presenter: Naomi Chayen, Professor, Imperial College London
Host: Jason Key
Recorded on December 4, 2013
Topic: Simple Ways to Enhance the Success of Crystallization Trials: Part II - Dynamic Experiments to Maximize Hits and Improve Crystal Quality
Presenter: Naomi Chayen, Professor, Imperial College London
SBGrid Host: Jason Key
Recorded on December 4, 2013
Topic: Simple Ways to Enhance the Success of Crystallization Trials: Part I - Practical Crystallization Techniques
Presenter: Naomi Chayen, Professor, Imperial College London
Recorded on: December 4, 2013
Topic: Mechanisms of crosstalk between histone ubiquitination and methylation
Presenter: Evan Worden, Cynthia Wolberger's Laboratory, Johns Hopkins University School of Medicine
Thanks to Evan for persevering through the fire alarm, relocating and adding a face mask before continuing with his presentation!
Host: Jason Key
Recorded on June 30, 2020
Topic: Hot beams and cool crystals. Faster and smaller macromolecular crystallography at Diamond Light Source
Presenter: Robin Owen, Principal Beamline Scientist, I24 Diamond Light Source.
Host: Goran Malojcic
Recorded on July 25, 2014
Topic: Structural characterization of a new co-chaperone involved in client-transfer between heat shock proteins
Presenter: Florent Delhommel, Ph.D., Michael Sattler's group, Technical University of Munich
Recorded on March 9, 2021
Host: Pete Meyer
Topic: Geneious (Custom BLAST, workflow builder, annotation tools, CRISPER tools)
Presenter: Christian Olsen, Field Application Scientist at
Biomatters, Inc
Host: Jason Key
Recorded on July 26, 2016
Topic: Geneious R7: Sequence Analysis Tool for Biologists
Presenter: Christian Olsen, Biomatters, Inc.
Host: Jason Key
Recorded on Sept 9th, 2014
Topic: Geneious R7: Molecular Cloning Tools for Biologists
Presenter: Christian Olsen, Biomatters, Inc.
Host: Jason Key
Recorded on September 30, 2014
Topic: Getting Started with SBGrid
Presenter: Jason Key, SBGrid Consortium, Harvard Medical School
Recorded on October 29, 2014
Topic: ICM-Browser-Pro: 3D Molecular Graphics and Protein Structure Analysis
Presenter: Andrew Orry, Ph.D. , Senior Scientist, Molsoft LLC
Host: Pete Meyer
Recorded on May 16, 2017