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Webinars

CCP-EM

    • Topic: CCP-EM: software for cryo-EM
    Presenter: Colin Palmer, PhD - Science and Technology Facilities Council

    Recorded on May 22, 2020
    Host: Shaun Rawson

    CCP-EM

    • Topic: Model building and validation in CCP-EM
    Presenter: Colin Palmer, Computational Scientist, Science & Technology Facilities Council

    Recorded on: July 23, 2019
    Host: Jason Key

    Cinderella

    • Topic: Cinderella

    Presenter: Thorsten Wagner, Post-doctoral Fellow, Max Planck Institute of Molecular Physiology


    Host: Jason Key

    Recorded on March 10, 2020

    CryoDRGN

    • Topic: CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM
    Speaker: Ellen Zhong, MIT, Laboratories of Bonnie Berger and Joey Davis

    Host: Shaun Rawson
    Recorded on: May 15, 2020

    crYOLO

    • Topic: crYOLO and its utilization in feedback guided real-time processing Speaker: Dr. Thorsten Wagner, Max-Planck-Institute of Molecular Physiology Host: Pe...

    crYOLO

    • Topic: Fast, accurate and easy particle picking with crYOLO
    Presenter: Thorsten Wagner, Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology

    Host: Jason Key
    Recorded on: May 28, 2019

    EMAN2

    • Topic: In-situ and in-vitro subtomogram averaging to subnanometer resolution using EMAN2.3
    Presenter: Steven J Ludtke, Ph.D., Professor, Baylor College of Medicine

    Recorded on November 12, 2019
    Host: Jason Key

    EMAN2.1

    • Topic: A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis
    Presenter: Steven Ludtke, Ph.D., Professor, Baylor College of Medicine

    Host: Jason Key
    Recorded on April 15, 2015

    EMAN2.2

    • Topic: EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
    Presenter: Steven Ludtke, Ph.D.
    Professor of Biochemistry - Baylor College of Medicine
    Co-Director - National Center for Macromolecular Imaging
    Co-Director - Center for Computational and Integrative Biomedical Research

    Date Recorded: November 14, 2017
    Host: Jason Key

    Gorgon

    • Topic: Modeling Macromolecular Structures with Gorgon
    Presenter: Matt Baker, Ph.D., Instructor, Department of Biochemistry and Molecular Biology, Baylor College of Medicine

    Host: Jason Key
    Recorded on April 10th, 2014

    MotionCor2 and AreTomo

    • Topic: The recent progress of high-throughput cryo electron microscopy and cryo electron tomography at UCSF

    Presenter: Dr. Shawn Zheng, University of California, San Francisco


    Host: Shaun Rawson
    Recorded on April 29, 2020

    PARTICLE

    • Topic: PARTICLE: an Integrated Computing Platform for Single-Particle Electron Microscopy
    Presenter: James Chen, Ph.D., Research Scientist, Dept of Biology, MIT

    Host: Piotr Sliz
    Recorded on October 4, 2012

    RELION

    • Topic: RELION - Exploiting prior knowledge about biological macromolecules in cryo-EM structure determination
    Presenter: Dari Kimanius, Ph.D., MRC Laboratory of Molecular Biology

    Host: Shaun Rawson
    Recorded on June 2, 2020

    RELION

    • Topic: RELION
    Presenter: Sjors Scheres, Group Leader
    Medical Research Council, The Laboratory of Molecular Biology

    Host: Jason Key
    Recorded on March 24, 2015

    RELION 3.0

    • Topic : RELION-3: new tools for automated high-resolution cryo-EM structure determination
    Presenter: Sjors Scheres, Group Leader, MRC Laboratory of Molecular Biology, UK

    Host: Jason Key / Shaun Rawson
    Recorded: November 6, 2018

    Scipion

    • Topic: Quo Vaids Scipion
    Presenter: Pablo Conesa, Senior Software Developer, National Center for Biotechnology

    Host: Shaun Rawson
    Recorded on April 21, 2020

    Scipion

    • Topic: Using Scipion for Stream Image Processing at Cryo-EM Facilities
    Presenter: José Miguel de la Rosa Trevin, PhD, Scientific Software Engineer, SciLifeLab, Stockholm University, Sweden

    Host: Jason Key
    Recorded on June 12, 2018

    Single Particle EM Computational Challenges

    • Topic: Protein Structure Determination with Single Particle Electron Microscopy - Computational Challenges
    Presenter: Pawel Penczek, Ph.D., Professor and Director, Structural Biology Imaging Center, University of Texas Health Science Center at Houston

    Host: Jason Key
    Recorded on Jan 20, 2015

    SITUS

    • Topic: Combining Structures from Different Biophysical Origins with Situs
    Presenter: Willy Wriggers, Director, biomachina.org, Professor, Mechanical & Aerospace Engineering, Old Dominion University

    Host: Jason Key
    Recorded on October 4, 2016

    SPHIRE

    • Topic: SPHIRE: User-friendly pipeline for near-atomic resolution Cryo-EM structure determination with automatic validation mechanisms.
    Speaker: Toshio Moriya, Ph.D. Postdoctoral Fellow, Max Planck Institute of Molecular Physiology

    Host: Jason Key
    Recorded on: October 10, 2017

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