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Webinars

CCP-EM

    • Topic: CCP-EM: software for cryo-EM
    Presenter: Colin Palmer, PhD - Science and Technology Facilities Council

    Recorded on May 22, 2020
    Host: Shaun Rawson

    CCP-EM

    • Topic: Model building and validation in CCP-EM
    Presenter: Colin Palmer, Computational Scientist, Science & Technology Facilities Council

    Recorded on: July 23, 2019
    Host: Jason Key

    Cinderella

    • Topic: Cinderella

    Presenter: Thorsten Wagner, Post-doctoral Fellow, Max Planck Institute of Molecular Physiology


    Host: Jason Key

    Recorded on March 10, 2020

    CryoAssess

    • Topic: CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks
    Presenter: Yilai Li, Ph.D., University of Michigan

    Recorded on February 23, 2021
    Host: Shuan Rawson

    CryoDRGN

    • Topic: CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM
    Speaker: Ellen Zhong, MIT, Laboratories of Bonnie Berger and Joey Davis

    Host: Shaun Rawson
    Recorded on: May 15, 2020

    crYOLO

    • Topic: crYOLO and its utilization in feedback guided real-time processing
    Speaker: Dr. Thorsten Wagner, Max-Planck-Institute of Molecular Physiology

    Host: Pete Meyer
    Recorded on May 29, 2020

    crYOLO

    • Topic: Fast, accurate and easy particle picking with crYOLO
    Presenter: Thorsten Wagner, Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology

    Host: Jason Key
    Recorded on: May 28, 2019

    DeepEMhancer

    • Topic: DeepEMhancer: exploiting previous knowledge to enhance map visualization
    Presenter: Rubén Sánchez Garcia, Ph.D., The National Centre for Biotechnolgy, Spanish National Research Council


    Host: Pete Meyer
    Recorded on January 26, 2021

    Dynamo

    • Topic: The Dynamo package for cryoET data processing: from tilt series alignment to subtomogram averaging

    Presenter: Daniel Castaño Díez, Ph.D., Biozentrum, University of Basel

    Host: Shaun Rawson

    Recorded on June 8, 2021

    EMAN2

    • Topic: In-situ and in-vitro subtomogram averaging to subnanometer resolution using EMAN2.3
    Presenter: Steven J Ludtke, Ph.D., Professor, Baylor College of Medicine

    Recorded on November 12, 2019
    Host: Jason Key

    EMAN2

    • Topic: EMAN2
    Presenter: Steven Ludtke, Ph.D. Baylor College of Medicine


    Host: Jason Key
    Recorded on May 11, 2021

    EMAN2.1

    • Topic: A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis
    Presenter: Steven Ludtke, Ph.D., Professor, Baylor College of Medicine

    Host: Jason Key
    Recorded on April 15, 2015

    EMAN2.2

    • Topic: EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
    Presenter: Steven Ludtke, Ph.D.
    Professor of Biochemistry - Baylor College of Medicine
    Co-Director - National Center for Macromolecular Imaging
    Co-Director - Center for Computational and Integrative Biomedical Research

    Date Recorded: November 14, 2017
    Host: Jason Key

    Gorgon

    • Topic: Modeling Macromolecular Structures with Gorgon
    Presenter: Matt Baker, Ph.D., Instructor, Department of Biochemistry and Molecular Biology, Baylor College of Medicine

    Host: Jason Key
    Recorded on April 10th, 2014

    Integrative structural modeling of macromolecular complexes using Assembline

    • Topic: Integrative structural modeling of macromolecular complexes using Assembline
    Presenter: Jan Kosinski, Ph.D., Group leader, EMBL Hamburg

    Host: Pete Meyer
    Recorded on October 11, 2022

    Learn more from the
    - Assembline website: https://www.embl-hamburg.de/Assembline/
    - Publication: V. Rantos, K. Karius, and J. Kosinski. 2022. Integrative structural modeling of macromolecular complexes using Assembline. Nature Protocols. 17(1): 152-176.

    IsoNet

    • Topic: IsoNet - ISOtropic reconstructioN of Electron Tomography with deep learning
    Presenter: Yuntao Liu, Ph.D., University of California, Los Angeles

    Host: Shaun Rawson
    Recorded on November 30, 2021

    KLT Picker

    • Topic: KLT picker
    Presenter: Amitay Eldar, Ph.D., Prof. Yoel Shkolnisky's laboratory, Tel Aviv University

    Host: Shaun Rawson
    Recorded on May 4, 2021

    ModelAngelo

    • Topic: Automated atomic modeling for cryo-EM maps.
    Presenter: Kiarash Jamali, PhD student, Scheres group, MRC Laboratory of Molecular Biology, Cambridge, UK.

    Host: Jason Key
    Recorded on: March 14, 2023

    For more information on ModelAngelo: https://github.com/3dem/model-angelo

    MotionCor2 and AreTomo

    • Topic: The recent progress of high-throughput cryo electron microscopy and cryo electron tomography at UCSF

    Presenter: Dr. Shawn Zheng, University of California, San Francisco


    Host: Shaun Rawson
    Recorded on April 29, 2020

    PARTICLE

    • Topic: PARTICLE: an Integrated Computing Platform for Single-Particle Electron Microscopy
    Presenter: James Chen, Ph.D., Research Scientist, Dept of Biology, MIT

    Host: Piotr Sliz
    Recorded on October 4, 2012

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