Webinars
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Topic: CCP-EM: software for cryo-EM
Presenter: Colin Palmer, PhD - Science and Technology Facilities Council
Recorded on May 22, 2020
Host: Shaun Rawson
Topic: Model building and validation in CCP-EM
Presenter: Colin Palmer, Computational Scientist, Science & Technology Facilities Council
Recorded on: July 23, 2019
Host: Jason Key
Topic: Cinderella
Presenter: Thorsten Wagner, Post-doctoral Fellow, Max Planck Institute of Molecular Physiology
Host: Jason Key
Recorded on March 10, 2020
Topic: CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks
Presenter: Yilai Li, Ph.D., University of Michigan
Recorded on February 23, 2021
Host: Shuan Rawson
Topic: CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM
Speaker: Ellen Zhong, MIT, Laboratories of Bonnie Berger and Joey Davis
Host: Shaun Rawson
Recorded on: May 15, 2020
Topic: crYOLO and its utilization in feedback guided real-time processing
Speaker: Dr. Thorsten Wagner, Max-Planck-Institute of Molecular Physiology
Host: Pete Meyer
Recorded on May 29, 2020
Topic: Fast, accurate and easy particle picking with crYOLO
Presenter: Thorsten Wagner, Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology
Host: Jason Key
Recorded on: May 28, 2019
Topic: DeepEMhancer: exploiting previous knowledge to enhance map visualization
Presenter: Rubén Sánchez Garcia, Ph.D., The National Centre for Biotechnolgy, Spanish National Research Council
Host: Pete Meyer
Recorded on January 26, 2021
Topic: The Dynamo package for cryoET data processing: from tilt series alignment to subtomogram averaging
Presenter: Daniel Castaño Díez, Ph.D., Biozentrum, University of Basel
Host: Shaun Rawson
Recorded on June 8, 2021
Topic: In-situ and in-vitro subtomogram averaging to subnanometer resolution using EMAN2.3
Presenter: Steven J Ludtke, Ph.D., Professor, Baylor College of Medicine
Recorded on November 12, 2019
Host: Jason Key
Topic: EMAN2
Presenter: Steven Ludtke, Ph.D. Baylor College of Medicine
Host: Jason Key
Recorded on May 11, 2021
Topic: A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis
Presenter: Steven Ludtke, Ph.D., Professor, Baylor College of Medicine
Host: Jason Key
Recorded on April 15, 2015
Topic: EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
Presenter: Steven Ludtke, Ph.D.
Professor of Biochemistry - Baylor College of Medicine
Co-Director - National Center for Macromolecular Imaging
Co-Director - Center for Computational and Integrative Biomedical Research
Date Recorded: November 14, 2017
Host: Jason Key
Topic: Modeling Macromolecular Structures with Gorgon
Presenter: Matt Baker, Ph.D., Instructor, Department of Biochemistry and Molecular Biology, Baylor College of Medicine
Host: Jason Key
Recorded on April 10th, 2014
Topic: Integrative structural modeling of macromolecular complexes using Assembline
Presenter: Jan Kosinski, Ph.D., Group leader, EMBL Hamburg
Host: Pete Meyer
Recorded on October 11, 2022
Learn more from the
- Assembline website: https://www.embl-hamburg.de/Assembline/
- Publication: V. Rantos, K. Karius, and J. Kosinski. 2022. Integrative structural modeling of macromolecular complexes using Assembline. Nature Protocols. 17(1): 152-176.
Topic: IsoNet - ISOtropic reconstructioN of Electron Tomography with deep learning
Presenter: Yuntao Liu, Ph.D., University of California, Los Angeles
Host: Shaun Rawson
Recorded on November 30, 2021
Topic: KLT picker
Presenter: Amitay Eldar, Ph.D., Prof. Yoel Shkolnisky's laboratory, Tel Aviv University
Host: Shaun Rawson
Recorded on May 4, 2021
Topic: Automated atomic modeling for cryo-EM maps.
Presenter: Kiarash Jamali, PhD student, Scheres group, MRC Laboratory of Molecular Biology, Cambridge, UK.
Host: Jason Key
Recorded on: March 14, 2023
For more information on ModelAngelo: https://github.com/3dem/model-angelo
Topic: The recent progress of high-throughput cryo electron microscopy and cryo electron tomography at UCSF
Presenter: Dr. Shawn Zheng, University of California, San Francisco
Host: Shaun Rawson
Recorded on April 29, 2020
SBGrid webinars are hosted with partial support from the NIH R25 Continuing Education for Structural Biology Mentors #GM151273, in collaboration with Co-PI Jamaine Davis of Meharry Medical College.
Topic: OccuPy: A software tool for heterogeneity - and occupancy analysis of cryo-EM reconstructions based on spatial filtering.
Presenter: Björn Forsberg, Ph.D, Postdoctoral Fellow, Karolinska Institutet
Host: Pete Meyer
Recorded on February 13, 2023
For more information on OccuPy:
https://sbgrid.org/software/titles/occupy
https://occupy.readthedocs.io/en/latest
https://github.com/bforsbe/OccuPy