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Webinars

PARTICLE

  • PARTICLE
  • Topic: PARTICLE: an Integrated Computing Platform for Single-Particle Electron Microscopy
    Presenter: James Chen, Ph.D., Research Scientist, Dept of Biology, MIT

    Host: Piotr Sliz
    Recorded on October 4, 2012

    RELION

  • RELION
  • Topic: RELION - Exploiting prior knowledge about biological macromolecules in cryo-EM structure determination
    Presenter: Dari Kimanius, Ph.D., MRC Laboratory of Molecular Biology

    Host: Shaun Rawson
    Recorded on June 2, 2020

    RELION

  • RELION
  • Topic: RELION
    Presenter: Sjors Scheres, Group Leader
    Medical Research Council, The Laboratory of Molecular Biology

    Host: Jason Key
    Recorded on March 24, 2015

    RELION 3.0

  • RELION 3.0
  • Topic : RELION-3: new tools for automated high-resolution cryo-EM structure determination
    Presenter: Sjors Scheres, Group Leader, MRC Laboratory of Molecular Biology, UK

    Host: Jason Key / Shaun Rawson
    Recorded: November 6, 2018

    RELION-4.0

  • RELION-4.0
  • Topic: New developments in RELION-4.0
    Presenter: Prof. Sjors Scheres, MRC Laboratory of Molecular Biology

    Host: Jason Key
    Recorded on December 7, 2021

    RELION-5.0: Recent developments

  • RELION-5.0: Recent developments
  • SBGrid webinars are hosted with partial support from the NIH R25 Continuing Education for Structural Biology Mentors #GM151273, in collaboration with Co-PI Jamaine Davis of Meharry Medical College.

    Topic: RELION-5.0: Recent developments

    Presenter: Prof. Sjors Scheres, MRC Laboratory of Molecular Biology

    Host: Shaun Rawson
    Recorded on March 12, 2024

    For more information on RELION:

    https://sbgrid.org/software/titles/relion
    https://www2.mrc-lmb.cam.ac.uk/group-leaders/n-to-s/sjors-scheres/

    Scipion

  • Scipion
  • Topic: Quo Vaids Scipion
    Presenter: Pablo Conesa, Senior Software Developer, National Center for Biotechnology

    Host: Shaun Rawson
    Recorded on April 21, 2020

    Scipion

  • Scipion
  • Topic: Using Scipion for Stream Image Processing at Cryo-EM Facilities
    Presenter: José Miguel de la Rosa Trevin, PhD, Scientific Software Engineer, SciLifeLab, Stockholm University, Sweden

    Host: Jason Key
    Recorded on June 12, 2018

    Scipion 3.0

  • Scipion 3.0
  • Topic: Scipion 3.0
    Presenter: Jose Miguel de la Rosa Trevin, Ph.D., Research Engineer, Science for Life Laboratory, Stockholm University

    Host: Jason Key
    Recorded on October 20, 2020

    ScipionTomo

  • ScipionTomo
  • Topic: ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation.

    Presenter: Pablo Conesa Team Leader, Spanish National Research Council

    Host: Jason Key
    Recorded on October 10, 2023

    For more information on Scipion:

    https://sbgrid.org/software/titles/scipion
    https://github.com/pconesa

    Single Particle EM Computational Challenges

  • Single Particle EM Computational Challenges
  • Topic: Protein Structure Determination with Single Particle Electron Microscopy - Computational Challenges
    Presenter: Pawel Penczek, Ph.D., Professor and Director, Structural Biology Imaging Center, University of Texas Health Science Center at Houston

    Host: Jason Key
    Recorded on Jan 20, 2015

    SITUS

  • SITUS
  • Topic: Integrative Structural Biology with SITUS
    Presenter: Prof. Willy Wriggers, Old Dominion University

    Host: Jason Key

    Recorded on March 2, 2021


    Willy Wriggers
    Professor, Mechanical & Aerospace Engineering, Old Dominion University
    Dr. Wriggers earned a Ph.D. in Physics from the University of Illinois, Urbana-Champaign in 1998. He held postdoctoral positions in Electron Microscopy (Scripps Research Institute) as well as Theoretical Chemistry (University of California, San Diego). In 1999 he was appointed Assistant Professor at The Scripps Research Institute. In 2003 he moved to the University of Texas Health Science Center, Houston, where he earned tenure as Associate Professor of Biomedical Informatics and Molecular Medicine. In 2007 he joined the private D. E. Shaw Research laboratory in New York City. In 2014 he returned to an academic position as Frank Batten Chair of Mechanical and Aerospace Engineering at ODU.


    Situs Resources for SBGrid users:
    Main web site for SBGrid version: http://situs.biomachina.org
    Tutorials: http://situs.biomachina.org/ftut.html
    Individual tool manuals: http://situs.biomachina.org/fguide.html
    Publications: http://situs.biomachina.org/fref.html
    Other Situs variants that may not be available in SBGrid: http://situs.biomachina.org/fflavors.html

    SITUS

  • SITUS
  • Topic: Combining Structures from Different Biophysical Origins with Situs
    Presenter: Willy Wriggers, Director, biomachina.org, Professor, Mechanical & Aerospace Engineering, Old Dominion University

    Host: Jason Key
    Recorded on October 4, 2016

    SPHIRE

  • SPHIRE
  • Topic: SPHIRE: User-friendly pipeline for near-atomic resolution Cryo-EM structure determination with automatic validation mechanisms.
    Speaker: Toshio Moriya, Ph.D. Postdoctoral Fellow, Max Planck Institute of Molecular Physiology

    Host: Jason Key
    Recorded on: October 10, 2017

    TomoAlign

  • TomoAlign
  • Topic: TomoAlign: Consideration of sample motion in cryoET
    Presenter: José-Jesús Fernéndez, Spanish National Centre for Biotechnology, Group Leader

    Host: Jason Key
    Recorded on: April 2, 2019

    TomoTwin-cryoet

  • TomoTwin-cryoet
  • Topic: TomoTwin-cryoet
    Presenter: Thorsten Wagner, Ph.D., Project Group Leader - Computational Structural Biology, Max-Planck-Institute of Molecular Physiology

    Host: Jason Key
    Recorded on November 8, 2022

    TranSPHIRE

  • TranSPHIRE
  • Topic: TranSPHIRE
    Presenter: Markus Stabrin, Max Planck Institute of Molecular Physiology
    TranSPHIRE


    Host: Shaun Rawson
    Recorded on Tuesday, October 27th

    UCSF Chimera

  • UCSF Chimera
  • Topic: Analyzing Molecular Assemblies with UCSF Chimera"
    Presenter: Tom Goddard, Programmer/Analyst, Resource for Biocomputing, Visualization, and Informatics, UCSF

    Host: Jason Key
    Recordeed on February 7, 2013

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