SBGrid Consortium homepage

a pipeline for particle detection in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Topaz includes methods for micrograph denoising using deep denoising models.

(X-ray Detector Software) a software tool for processing single-crystal monochromatic diffraction data recorded by the rotation method.

an automatic atomic model building program for cryo-EM maps.

is a model that samples from the approximated equilibrium distribution of structures for a protein monomer, given its amino acid sequence.

a tool of the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. Compared to Chimera, ChimeraX has improved graphics (e.g. interactive ambient shadows); faster handling of large structures (millions of atoms); and a more modern, single-window user interface.

a tool for membrane segmentation in 3D for cryo-electron tomography (cryo-ET).

a neural network based algorithm for heterogeneous cryo-EM reconstruction. In particular, the method models a continuous distribution over 3D structures by using a neural network based representation for the volume.

a tool for membrane segmentation in 3D for cryo-electron tomography (cryo-ET).

Deep learning framework for detecting the secondary structures of proteins and the region of nucleic acids in a cryo-EM map

A complete dashboard for easy interaction with your cryo-EM data in Relion, now with full #teamtomo support!