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MemBrain-Seg

  • Description

    a tool for membrane segmentation in 3D for cryo-electron tomography (cryo-ET).

  • Usage

    To list all executables provided by MemBrain-Seg, run: $ sbgrid-list membrain-seg Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install membrain-seg Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    L. Lamm, R. D. Righetto, W. Wietrzynski, M. Pöge, A. Martinez-Sanchez, T. Peng, and B. D. Engel. 2022. MemBrain: A deep learning-aided pipeline for detection of membrane proteins in Cryo-electron tomograms. Computer Methods and Programs in Biomedicine. 224: 106990.

    L. Lamm, S. Zufferey, R. D. Righetto, W. Wietrzynski, K. A. Yamauchi, A. Burt, Y. Liu, H. Zhang, A. Martinez-Sanchez, S. Ziegler, F. Isensee, J. A. Schnabel, B. D. Engel, and &. T. Peng. 2024. MemBrain v2: an end-to-end tool for the analysis of membranes in cryo-electron tomography. BioRXiv.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  215b3d5 (5.5 GB)
    OS X INTEL:  215b3d5 (1.2 GB)

  • Other Versions

      Linux 64:

      0.0.1 (7.7 GB) , d76e97e (5.3 GB) , e28baac (5.3 GB)

    • OS X INTEL:

      0.0.1 (2.4 GB) , d76e97e (1.3 GB) , e28baac (1.4 GB)

  • Developers

    Lorenz Lamm, Alister Burt, Kevin Yamauchi, Ricardo Righetto, Tingying Peng, Benjamin D Engel, Benjamin A Barad, Julia A Schnabel

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