GeRelion

a GPU-enhanced version of RELION that dramatically speeds up 2D/3D classification and 3D auto-refine.

iMODFit

an efficient tool for flexible fitting of atomic structures into EM maps based on Normal Mode Analysis in internal Coordinates.

em2em

a program to convert images from/to formats used in the "electron microscopical community" (3DEM)

XDSAPP

a graphical user interface for processing diffraction data sets using XDS. It automates the data processing and generates graphical plots of various data set statistics provided by XDS and presenting new features of the dataset, such as radiation decay or the presence of pseudo-translational symmetry and/or twinning, using additional software. Generates intensity files suitable for CCP4, SHELX, and CNS.

adxv

displays protein crystallography X-ray diffraction data. The data may be displayed as a 2-D image, 3-D wire mesh or as integer pixel values. Data files may be saved in tiff or postscript format.

TeX Live

cleans up raw data files and converts them to pdf format with LaTex. TeX Live offers an easy way to get up and running with the TeX document production system.

Molprobity

a protein structure analysis platform offering quality validation for 3D structures of proteins, nucleic acids and complexes.

PHENIX 2016 reference data

Reference data sets for the SBGrid phenix 2016 workshop

3

X-Ray Diffraction data from Lin28/let-7d microRNA complex, source of 3TRZ structure

Data DOI: 10.15785/SBGRID/3 Publication DOI: 10.1016/j.cell.2011.10.020 Sliz Laboratory, Harvard Medical School Release Date: April 13, 2015 https://data.sbgrid.org/dataset/3/

97

X-Ray Diffraction data from Thermoanaerobacter tengcongensis SONO (H-NOX) in complex with dioxygen, source of 1XBN structure

Data DOI: 10.15785/SBGRID/97 Publication DOI: 10.1126/science.1103596 Raman Laboratory, University of Maryland Release Date: May 19, 2015 https://data.sbgrid.org/dataset/97/

111

X-Ray Diffraction data from 'Spinach' RNA-chromophore complex, source of 4TS0 structure

Data DOI: 10.15785/SBGRID/111 Publication DOI: 10.1038/nsmb.2865 Ferré-D'Amaré Laboratory, National Institutes of Health Release Date: May 19, 2015 https://data.sbgrid.org/dataset/111/

123

X-Ray Diffraction data from HSV-2 gH/gL complex, source of 3M1C structure

Data DOI: 10.15785/SBGRID/123 Publication DOI: 10.1038/nsmb.1837 Heldwein Laboratory, Tufts University School of Medicine Release Date: May 21, 2015 https://data.sbgrid.org/dataset/123/

QuShape

a comprehensive, platform-independent, user-friendly, and complete software package that enables efficient, reliable, highly automated, and accurate analysis of high-throughput capillary electrophoresis-detected nucleic acid chemical probing experiments.

SIMPLE

(Single-particle IMage Processing Linux Engine) does ab initio 3D reconstruction (programs cluster & origami), heterogeneity analysis (programs cluster, origami & cycler), and high-resolution refinement (programs align, reconstruct, automask & cycler).