Nov 30 2023
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RELION
(REgularised LIkelihood OptimisatioN) a stand-alone computer program for Maximum A Posteriori (MAP) refinement of (multiple) 3D reconstructions or 2D class averages in cryo-electron microscopy.
Updated versions:
5.0-beta_cu11.6 | Linux 64
5.0-beta_cu10.1 | Linux 64
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Nov 28 2023
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3D Slicer
is a free and open-source platform for analyzing and understanding medical image data.
Updated versions:
5.6.0 | OS X INTEL
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Nov 28 2023
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IMOD
a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections.
Updated versions:
4.11.24 | OS X INTEL
4.11.24 | Linux 64
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Nov 22 2023
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SBGrid Installer
an application for managing an SBGrid software installation. Users can choose a subset of applications for installation on their laptops or desktops or configure site installations for clusters, servers or cloud resources. This version is the command-line interface. A graphical version is available for download on the SBGrid wiki : https://sbgrid.org/wiki/client_downloads .
Updated versions:
2.9.9 | OS X INTEL
2.9.9 | Linux 64
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Nov 22 2023
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3D Slicer
is a free and open-source platform for analyzing and understanding medical image data.
Updated versions:
5.4.0 | Linux 64
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Nov 21 2023
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XDSGUI Open Source
an open source build of XDSGUI.
Updated versions:
20231116 | Linux 64
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Nov 21 2023
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
12.1 | Linux 64
12.1.1 | Linux 64
11.8 | Linux 64
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Nov 21 2023
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RELION composite masks
a RELION 4 and 5 with support for composite masks
Updated versions:
20230531_cu11.8 | Linux 64
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Nov 21 2023
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XDSGUI Open Source
an open source build of XDSGUI.
Updated versions:
20231116 | OS X INTEL
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Nov 18 2023
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Scipion
Scipion is an open-source cryo-EM workflow platform that supports complete SPA and Tomography pipelines, from raw movies or tilt-series movies to final post-processed maps. It combines Xmipp algorithms with leading cryo-EM software. It can complement or provide an alternative to full-pipeline packages such as RELION and cryoSPARC, while taking care of formats and conversions in a completely transparent way for the user.
Updated versions:
20230901_2 | Linux 64
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Nov 17 2023
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CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
12.2.2 | Linux 64
12.2 | Linux 64
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Nov 17 2023
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R
a free software environment for statistical computing and graphics.
Updated versions:
4.2.1 | Linux 64
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Nov 15 2023
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TomoTwin-cryoet
a deep metric learning based particle picking procedure for cryo-ET
Updated versions:
0.6.1 | Linux 64
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Nov 15 2023
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ModelAngelo
an automatic atomic model building program for cryo-EM maps.
Updated versions:
1.0.6 | Linux 64
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Nov 15 2023
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Julia
a flexible dynamic language appropriate for scientific and numerical computing with performance comparable to traditional statically-typed languages.
Updated versions:
1.9.3 | Linux 64
1.9.3 | OS X INTEL
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Nov 14 2023
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Rosetta
a software suite for modeling macromolecular structures and for predicting and designing protein structures, protein folding mechanisms, and protein-protein interactions.
Updated versions:
3.13 | OS X INTEL
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Nov 13 2023
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Amber
a suite of biomolecular simulation programs. It began in the late 1970's, and is maintained by an active development community.
Updated versions:
18 | Linux 64
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Nov 13 2023
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REINVENT
a molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design, molecule optimization, and other small molecule design tasks.
Updated versions:
4.0 | Linux 64
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Nov 13 2023
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AreTomo
(Alignment and Reconstruction for Electron Tomography) is a GPU-accelerated software package that provides an integrated solution to both fiducial-free alignment and reconstruction for cryoEM tomography.
Updated versions:
1.3.4 | Linux 64
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Nov 12 2023
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AutoGrow4
an open-source program for semi-automated computer-aided drug discovery. It uses a genetic algorithm to evolve predicted ligands on demand and so is not limited to a virtual library of pre-enumerated compounds.
Updated versions:
4.0.3 | Linux 64
4.0.3 | OS X INTEL
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Nov 05 2023
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Careless
a tool that merges crystallography data without much physics. It performs scaling, merging, and French-Wilson corrections in a single step by directly inferring structure factor amplitudes from unscaled, unmerged intensities.
Updated versions:
0.3.9_arm | OS X INTEL
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