Supported Applications
Scipion
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Description
an image processing framework to obtain 3D models of macromolecular complexes using 3D EM that allows you to execute workflows combining different software tools, while taking care of formats and conversions.
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Usage Notes
SCIPION uses software that depends on CUDA 8.0 for GPU acceleration
SCIPION can use a local directory at /programs/local/scipion/1.0.1/data/tests for test datasets that are too large to include with the software.
SCIPION can download these automatically, but you (or your local sysadmin) will need to create a directory for them.
Please email bugs@sbgrid.org if you have questions or problems. -
Primary Citation*
J. M. de l. Rosa-Trevín, A. Quintana, L. d. Cano, A. Zaldívar, I. Foche, J. Gutiérrez, J. Gómez-Blanco, J. Burguet-Castell, J. Cuenca-Alba, V. Abrishami, J. Vargas, J. Otón, G. Sharov, J. L. Vilas, J. Navas, P. Conesa, M. Kazemi, R. Marabini, C. O. S. Sorzano, and J. M. Carazo. 2016. Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy. Journal of Structural Biology. 195(1): 93-99.
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*Full citation information available through
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Citation Note
Please cite the following url when citing Scipion: http://scipion.i2pc.es/
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Webinars
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Keywords
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Default Versions
Linux 64:  2.0
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Other Available Versions
Linux 64:
1.2.1