Apr 27 2022
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PyEM
Python modules and command-line utilities for electron microscopy of biological samples.
Updated versions:
20220427 | Linux 64
20220427 | OS X INTEL
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Apr 26 2022
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Scipion
an image processing framework to obtain 3D models of macromolecular complexes using 3D EM that allows you to execute workflows combining different software tools, while taking care of formats and conversions.
Updated versions:
3.0.10 | Linux 64
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Apr 19 2022
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Emap2sec+
a computational tool using deep learning that can accurately identify structures, alpha helices, beta sheets, other(coils/turns) and DNA/RNA, in cryo-EM maps of medium to low resolution.
Updated versions:
2.0 | OS X INTEL
2.0 | Linux 64
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Apr 19 2022
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seaview
is a multiplatform, graphical user interface for multiple sequence alignment and molecular phylogeny.
Updated versions:
5.0.4 | Linux 64
5.0.4 | OS X INTEL
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Apr 15 2022
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R-pkgs-SBGrid
contains optional R pkgs
Updated versions:
r4.1-20220415 | OS X INTEL
r4.1-20220415 | Linux 64
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Apr 12 2022
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Jalview
a multiple sequence alignment editor written in Java. It is used widely in a variety of web pages (e.g. the EBI Clustalw server and the Pfam protein domain database) but is available as a general purpose alignment editor.
Updated versions:
2.11.2.1 | OS X INTEL
2.11.2.1 | Linux 64
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Apr 07 2022
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SAMtools
(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.
Updated versions:
1.15.1 | OS X INTEL
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Apr 07 2022
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IceBreaker
software for ice gradient estimation and removal on cryoEM micrographs.
Updated versions:
0.3.5 | OS X INTEL
0.3.5 | Linux 64
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Apr 06 2022
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PyRosetta
an interactive Python-based interface to the powerful Rosetta molecular modeling suite that enables users to design their own custom molecular modeling algorithms using Rosetta sampling methods and energy functions.
Updated versions:
2022.12 | Linux 64
2022.12 | OS X INTEL
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Apr 01 2022
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Schrodinger
a suite of tools for drug discovery. The Schrodinger suite runs on Linux and Mac workstations, but due to its size, it is not included in our default installation.
Updated versions:
2018-1 | OS X INTEL
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