May 30 2019
|
MAIN
a model building application for X-ray crystallography.
Updated versions:
2019 | Linux 64
2019 | OS X INTEL
|
May 29 2019
|
saxsview
a plotting facility for SAXS-data, as well as a convenient tool to quickly generate plots for publication. Saxsview shows 1D-data in .dat, .int, .fit and .fir formats of the ATSAS package, the cansas .xml format (v1.0), as well as .csv files.
Updated versions:
0.2 | Linux 64
|
May 20 2019
|
DSSR
(Dissecting the Spatial Structure of RNA) a software tool for dissecting the spatial structure of RNA.
Updated versions:
1.9.2-20190506 | Linux 64
1.9.2-20190506 | OS X INTEL
|
May 16 2019
|
3DNA
a versatile, integrated software system for the analysis, rebuilding, and visualization of 3-dimensional nucleic acid structures.
Updated versions:
2.4 | OS X INTEL
2.4 | Linux 64
|
May 14 2019
|
Situs
a program package for modeling of atomic resolution structures into low-resolution density maps. The software supports both rigid-body and flexible docking using a variety of fitting strategies.
Updated versions:
3.1 | OS X INTEL
3.1 | Linux 64
|
May 10 2019
|
LIGPLOT
a program for automatically plotting protein-ligand interactions.
Updated versions:
4.5.3 | OS X INTEL
4.5.3 | Linux 64
|
May 09 2019
|
PLUMED
an open source library for free energy calculations in molecular systems that works with some of the most popular molecular dynamics engines. Perform free energy calculations as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation-based steered MD.
Updated versions:
2.5.1 | Linux 64
|
May 09 2019
|
CUDA
a tool that helps redistributable software libraries to support CUDA applications for Linux.
Updated versions:
10.1 | Linux 64
10.0 | Linux 64
|
May 08 2019
|
T-Coffee
a multiple sequence alignment package that can be used to align sequences or to combine the output of your favorite alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment (M-Coffee).
Updated versions:
12.00 | OS X INTEL
12.00 | Linux 64
9.01 | OS X INTEL
9.01 | Linux 64
|
May 04 2019
|
ScÅtter
a JAVA-based application for basic analysis of SAXS datasets. Scatter is developed by Robert Rambo at the Diamond Light Source (Didcot, UK). The program was previously developed at the SIBYLS beamline (12.3.1) of the Advanced Light Source, Berkeley, CA.
Updated versions:
3.2b | Linux 64
3.2b | OS X INTEL
|
May 04 2019
|
ilastik
a simple, user-friendly tool for interactive image classification, segmentation and analysis. It is built as a modular software framework, which currently has workflows for automated (supervised) pixel- and object-level classification, automated and semi-automated object tracking, semi-automated segmentation and object counting without detection.
Updated versions:
1.3.0 | Linux 64
1.3.0 | OS X INTEL
|
May 03 2019
|
MODULE
a novel program developed to allow the determination of alignment tensor parameters for individual or multiple domains in macromolecules from residual dipolar couplings and to facilitate their manipulation and construct low-resolution models of macromolecular structure.
Updated versions:
2.0 | Linux 64
|
May 02 2019
|
xdsme
a collection of python scripts made to simplify the processing of crystal diffraction images with the XDS Program Package. Provided that the diffraction parameters are well recorded in the diffraction image headers, XDS data processing can be started with a simple command lines (see manual for details).
Updated versions:
0.6.2 | Linux 64
0.6.2 | OS X INTEL
0.6.0 | OS X INTEL
0.6.6 | Linux 64
|
May 02 2019
|
PyEM
a set of Python modules and command-line utilities for electron microscopy of biological samples.
Updated versions:
0.4 | OS X INTEL
|
May 02 2019
|
xdsme
a collection of python scripts made to simplify the processing of crystal diffraction images with the XDS Program Package. Provided that the diffraction parameters are well recorded in the diffraction image headers, XDS data processing can be started with a simple command lines (see manual for details).
Updated versions:
0.6.6 | OS X INTEL
|
May 02 2019
|
PyEM
a set of Python modules and command-line utilities for electron microscopy of biological samples.
Updated versions:
0.4 | Linux 64
|
