Tumblr

SBGridTV

Supported Applications

PLUMED

  • Description

    an open source library for free energy calculations in molecular systems that works with some of the most popular molecular dynamics engines. Perform free energy calculations as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation-based steered MD.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid install plumed Copy to clipboard
  • Primary Citation*

    G. A. Tribello, M. Bonomi, D. Branduardi, C. Camilloni, and G. Bussi. 2014. PLUMED 2: New feathers for an old bird. Computer Physics Communications. 185(2): 604-613.


    • *Full citation information available through

  • Citation Note

    Please use the following (or equivalent) wording in any work published using PLUMED: "This work was carried out using the open-source, community-developed PLUMED library, version 2.x (or alternatively version 1.x)."

    Please visit the PLUMED website for additional citation instructions.

  • Webinars

    Topic: Analyzing and enhancing molecular dynamics simulations with PLUMED
    Presenters: Giovanni Bussi -- Associate Professor, SISSA, Trieste, Italy
    Massimiliano Bonomi -- Postdoc, University of Cambridge, Vendruscolo Group

    Recorded on May 22, 2018
    Host: Jason Key

Scroll