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T-Coffee

  • Description

    a multiple sequence alignment package that can be used to align sequences or to combine the output of your favorite alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment (M-Coffee).

  • Usage

    To list all executables provided by T-Coffee, run: $ sbgrid-list t-coffee Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install t-coffee Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    C. Notredame, D. G. Higgins, and J. Heringa. 2000. T-Coffee: A novel method for multiple sequence alignments. J Mol Biol. 302: 205-217.


    • *Full citation information available through

  • Citation Note

    If you use the local version of T-Coffee, cite the original 2000 paper (above). Otherwise, cite the paper corresponding to the server you have been using (click on the "cite" button associated with every server on www.tcoffee.org).

  • Keywords

    Other

  • Default Versions

    Linux 64:  13.46.0 (2.4 GB)
    OS X INTEL:  13.46.0 (2.4 GB)

  • Other Versions

      Linux 64:

      12.00 (2.9 MB) , 8.99 (39.4 MB) , 9.01 (40.2 MB)

    • OS X INTEL:

      12.00 (3.1 MB) , 8.97 (27.0 MB) , 8.99 (1.2 KB) , 9.01 (32.6 MB)

  • Developers

    Cedric Notredame

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