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SBGridTV

Supported Applications

Situs

  • Description

    a program package for modeling of atomic resolution structures into low-resolution density maps. The software supports both rigid-body and flexible docking using a variety of fitting strategies.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install situs Copy to clipboard
  • Primary Citation*

    W. Wriggers. 2012. Conventions and workflows for using Situs. Acta Crystallogr D Biol Crystallogr. 68: 344-351.


    • *Full citation information available through

  • Webinars

    Topic: Integrative Structural Biology with SITUS
    Presenter: Prof. Willy Wriggers, Old Dominion University

    Host: Jason Key

    Recorded on March 2, 2021


    Willy Wriggers
    Professor, Mechanical & Aerospace Engineering, Old Dominion University
    Dr. Wriggers earned a Ph.D. in Physics from the University of Illinois, Urbana-Champaign in 1998. He held postdoctoral positions in Electron Microscopy (Scripps Research Institute) as well as Theoretical Chemistry (University of California, San Diego). In 1999 he was appointed Assistant Professor at The Scripps Research Institute. In 2003 he moved to the University of Texas Health Science Center, Houston, where he earned tenure as Associate Professor of Biomedical Informatics and Molecular Medicine. In 2007 he joined the private D. E. Shaw Research laboratory in New York City. In 2014 he returned to an academic position as Frank Batten Chair of Mechanical and Aerospace Engineering at ODU.


    Situs Resources for SBGrid users:
    Main web site for SBGrid version: http://situs.biomachina.org
    Tutorials: http://situs.biomachina.org/ftut.html
    Individual tool manuals: http://situs.biomachina.org/fguide.html
    Publications: http://situs.biomachina.org/fref.html
    Other Situs variants that may not be available in SBGrid: http://situs.biomachina.org/fflavors.html

    Topic: Combining Structures from Different Biophysical Origins with Situs
    Presenter: Willy Wriggers, Director, biomachina.org, Professor, Mechanical & Aerospace Engineering, Old Dominion University

    Host: Jason Key
    Recorded on October 4, 2016

  • Keywords

    Crystallography, Electron Microscopy, SAXS

  • Default Versions

    Linux 64:  3.1rev2
    OS X INTEL:  3.1rev2

  • Other Versions

      Linux 64:

      3.1, 2.8
    • OS X INTEL:

      3.1, 2.8
  • Developers

    Situs Developer Team, Willy Wriggers

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