Webinars
Topic: Structural mechanism of heat-induced opening of a temperature-sensitive TRP channel
Presenters:
Arthur Neuberger, Ph.D. and Kirill Nadezhdin, Ph.D.,
Columbia University, Alexander Sobolevsky's Laboratory
Host: Pete Meyer
Recorded on October 5, 2021
Topic: NMRFAM-Sparky
Presenter: Woonghee Lee, Ph.D. National Magnetic Resonance Facility at Madison, and Biochemistry Department University of Wisconsin-Madison
Recorded on: April 3, 2018
Host: Jason key
Introduction to NMR Spectral Processing with NMRPipe
Presenter: Frank Delaglio, Ph.D.
Marketing Manager, NMR Software, Agilent Technologies
Recorded on November 14th
NMRPipe website: http://spin.niddk.nih.gov/NMRPipe/
Topic: Concepts in Spectral Processing of Conventional and Non-Uniformly Sampled NMR Data.
Presenter: Frank Delaglio, Ph.D., Principal Investigator, Institute for Bioscience and Biotechnology Research
Recorded on: December 5, 2017
Host: Jason Key
Topic: Processing of Conventional and Non-Uniformly Sampled NMR Data with NMRPipe.
Presenter: Frank Delaglio, Ph.D., Principal Investigator, Institute for Bioscience and Biotechnology Research
Recorded on December 12, 2017
Host: Pete Meyer
Presenter: Chris Waudby, Ph.D., Group Leader, University College London
Topic: TITAN: Getting the most from NMR titration experiments with two-dimensional lineshape analysis
Host: Jason Key
Recorded on January 10, 2023
Topic: Effective on-the-fly and downstream processing of CryoEM data
Presenter: Shaun Rawson, Ph.D., Harvard Medical School
This talk was presented as part of the SBGrid Spring Mini-series - Cryo-electron microscopy of membrane proteins: from sample to structure. See the full series lineup at https://sbgrid.org/webinars/
Organized by
Prof. Jamaine Davis, Meharry Medical College
Prof. Piotr Sliz, Harvard Medical School
Prof. Patrick Sexton, ARC Centre for Cryo-electron Microscopy of Membrane Proteins, Monash University
Recorded on March 29, 2022
Topic: Retraining AlphaFold2 yields new insights into its learning mechanism and capacity for generalization.
Presenter: Gustaf Ahdritz, Ph.D. Student, AlQuraishi Laboratory Columbia University.
Host: Jason Key
Recorded on April 11, 2023
For more information on OpenFold:
https://sbgrid.org/software/titles/openfold
https://github.com/aqlaboratory/openfold
Topic: OpenMM
Speaker: Peter Eastman, Senior Software Engineer, Vijay Pande's Group, Stanford University
Host: Jason Key
Recorded on February 28, 2017
Topic: PanDDA: extracting ligand-bound protein states from conventionally uninterpretable crystallographic electron density
Presenter: Nicholas Pearce, Postdoctoral Researcher, Utrecht University, The Netherlands
Recorded on: December 4th, 2018
Host: Jason Key
Panel: Phil Evans, Kay Diederichs, Zbyszek Otwinowski, and Jim Pflugrath
Panel Discussion: Table I Statistics
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Topic: PARTICLE: an Integrated Computing Platform for Single-Particle Electron Microscopy
Presenter: James Chen, Ph.D., Research Scientist, Dept of Biology, MIT
Host: Piotr Sliz
Recorded on October 4, 2012
Topic: PDBStat
Presenter: Roberto Tejero, Associate Professor, University of Valencia, Spain
Host: Jason Key
Recorded on January 28, 2016
Topic: Extending the reach of molecular replacement in Phaser
Presenter: Randy Read, Wellcome Trust Principal Research Fellow in the Department of Haematology at University of Cambridge.
Host: Piotr Sliz
Recorded on April 23, 2012
Topic: Density Modification and Model Building with cryo-EM maps.
Presenter: Tom Terwilliger, Laboratory Fellow, Los Alamos National Laboratory
Recorded on March 31, 2020
Host: Jason Key
Link to slides: https://drive.google.com/open?id=1SHQ...
Topic: Atomic model refinement and validation in Phenix
Presenter: Pavel Afonine, Computational Research Scientist, Berkeley Lab
Date recorded: April 3, 2020
Host: Pete Meyer
Topic: Map Sharpening; Model Building; other cryo-EM tools in Phenix
Presenter: Dorothee Liebschner, Berkeley Lab
Hosted by Jason Key
Recorded on April 7, 2020
Topic: Atomic model, map and model-to-map fit validation
Part I: Atomic model validation
Speaker: Pavel Afonine, Berkeley Lab
Host: Jason Key
Recorded on April 14, 2020
Topic: Phenix: Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution
Presenter: Jeff Headd, Postdoctoral Fellow at Lawrence Berkeley National Laboratories
Host: Piotr Sliz
Recorded on December 12, 2011
Topic: Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix
Presenter: Nigel Moriarty, Lawrence Berkeley National Labs
Host: Pete Meyer
Recorded on: October 8, 2019