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Webinars

Phenix/DivCon

  • Phenix/DivCon
  • Topic: Phenix/DivCon: accurate macromolecular crystallographic refinement using linear scaling, semiempirical quantum-mechanics.
    Presenter: Lance Westerhoff, President and General Manager

    Host: Jason Key
    Recorded on September 22, 2015

    Phenix/DivCon

  • Phenix/DivCon
  • Topic: XModeScore: using crystallography to determine protonation states, fragment binding modes, and flip-states.
    Speaker: Lance Westerhoff, President and General Manager at QuantumBio Inc.

    Date: recorded: Oct 2, 2018
    Host: Jason Key

    Phenix-Rosetta Refinement

  • Phenix-Rosetta Refinement
  • Topic: Refinement of challenging structures with Rosetta and Phenix
    Presenter: Nat Echols, Computational Scientist at Lawrence Berkeley National Labs

    Host: Andrew Morin
    Recorded on May 13th, 2014

    PLUMED

  • PLUMED
  • Topic: Analyzing and enhancing molecular dynamics simulations with PLUMED
    Presenters: Giovanni Bussi -- Associate Professor, SISSA, Trieste, Italy
    Massimiliano Bonomi -- Postdoc, University of Cambridge, Vendruscolo Group

    Recorded on May 22, 2018
    Host: Jason Key

    POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules.

  • POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules.
  • Topic: POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules.

    Presenter: Prof. Woonghee Lee - Assistant Professor, University of Colorado, Denver.

    Host: Jason Key
    Recorded on June 13, 2023.

    For more information on POKY:

    https://sbgrid.org/software/titles/poky
    https://sites.google.com/view/pokynmr/team?authuser=0

    ProDy

  • ProDy
  • Topic: Elastic Network Models and ProDy for Bimolecular Systems Dynamics
    Presenter: Ivet Bahar, University of Pittsburgh

    Host: Jason Key
    Recorded on June 26, 2016

    Prof. Brent Nannenga,- MicroED methodology and application

  • Prof. Brent Nannenga,- MicroED methodology and application
  • Topic: MicroED methodology and application
    Presenter: Prof. Brent Nannenga, Arizona State University

    Host: Jason Key
    Recorded on July 21, 2020

    Prof. Chris Hill - Structural insights to the mechanism of AAA unfoldases

  • Prof. Chris Hill - Structural insights to the mechanism of AAA unfoldases
  • Topic: Structural insights to the mechanism of AAA unfoldases
    Presenter: Prof. Chris Hill, University of Utah School of Medicine

    Host: Jason Key
    Recorded on June 16, 2020

    Prof. Daniela Fera - Allosteric Site Critical for B-Raf/MEK Kinase Interaction

  • Prof. Daniela Fera - Allosteric Site Critical for B-Raf/MEK Kinase Interaction
  • Topic: Uncovering an Allosteric Site Critical for the Interaction between B-Raf and MEK Kinases and Downstream MAPK Signaling
    Presenter: Prof. Daniela Fera, Swarthmore College


    Host: Pete Meyer

    Recorded on March 30, 2021

    Prof. Daniel Minor - K2P channel gating caught in the act

  • Prof. Daniel Minor - K2P channel gating caught in the act
  • Topic: K2P channel gating caught in the act: asymmetric pinching and dilation of a potassium channel selectivity filter
    Presenter: Prof. Daniel Minor, University of California, San Francisco

    Host: Pete Meyer
    Recorded on September 15, 2020

    Prof. Daniel Panne: Structural insights into genome folding by CTCF and cohesin

  • Prof. Daniel Panne: Structural insights into genome folding by CTCF and cohesin
  • Topic: Structural insights into genome folding by CTCF and cohesin
    Speaker: Prof. Daniel Panne, Group Leader, University of Leicester

    Host: Prof. Piotr Sliz
    Recorded on April 17, 2020

    Prof. Karin Reinisch - Structural insights into lipid transfer

  • Prof. Karin Reinisch - Structural insights into lipid transfer
  • Topic: Structural insights into lipid transfer
    Presenter: Prof. Karin Reinisch, Yale School of Medicine with an introduction by Prof. Stephen Harrison, Harvard Medical School

    Host: Stephen Harrison and Jason Key
    Recorded on May 26, 2020

    Prof. Marcos Sotomayor - The Molecular Machinery of Hearing

  • Prof. Marcos Sotomayor - The Molecular Machinery of Hearing
  • Topic: The Molecular Machinery of Hearing
    Presenter: Prof. Marcos Sotomayor, Ohio State University



    Recorded on March 16, 2021
    Host: Jason Key

    Prof. Qing Fan - Cryo-EM structure of human GABAB receptor

  • Prof. Qing Fan - Cryo-EM structure of human GABAB receptor
  • Topic: Cryo-EM structure of human GABAB receptor
    Presenter: Prof. Qing Fan, Columbia University

    Host: Jason Key
    Recorded on Sept 29, 2020

    Prof. Steve Reichow - Connexin-46/50 gap junction channels in a dynamic lipid environment

  • Prof. Steve Reichow - Connexin-46/50 gap junction channels in a dynamic lipid environment
  • Topic: Connexin-46/50 gap junction channels in a dynamic lipid environment resolved by CryoEM at 1.9 Ã…
    Presenter: Prof. Steve Reichow, Portland State University

    Host: Pete Meyer
    Recorded on: June 9, 2020

    Prof. Vera Moiseenkova-Bell -- Structural insights into TRP channels gating

  • Prof. Vera Moiseenkova-Bell -- Structural insights into TRP channels gating
  • Topic: Structural insights into TRP channels gating
    Presenter: Prof. Vera Moiseenkova-Bell, University of Pennsylvania Perelman School of Medicine

    Host: Pete Meyer
    Recorded on December 1, 2020

    Prof Yi-Wei Chang - CryoET & rhoptry secretion system in apicomplexan parasites

  • Prof Yi-Wei Chang - CryoET & rhoptry secretion system in apicomplexan parasites
  • Topic: Cryo-ET reveals structures and potential regulatory mechanisms of the rhoptry secretion system in apicomplexan parasites

    Presenter: Prof. Yi-Wei Chang, Ph.D., Perelman School of Medicine, University of Pennsylvania

    Host: Jason Key
    Recorded on November 16, 2021

    Proteus

  • Proteus
  • Topic: Proteus software for physics-based protein design
    Presenter: Prof. Thomas Simonson, BIOS Research Group, BIOcomputing and Structure, Ecole Polytechnique and the Centre National de la Recherche Scientifique

    Host: Pete Meyer
    Recorded on Dec 13, 2022

    PyMOL

  • PyMOL
  • Presenter: Thomas Stewart, Ph.D., Schrödinger
    Topic: A new approach to visual presets in PyMOL (upcoming in PyMOL 3.0)

    Recorded on March 1, 2022
    Host: Pete Meyer

    PyMOL

  • PyMOL
  • Topic: PyMOL Demo, Hints, and New Features
    Presenter: Thomas Holder, PyMOL Developer, Schrodinger

    Recorded on March 7, 2013

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