Lecture 17: Cctbx.xfel: New software for serial crystallography
Topic: Cctbx.xfel: New software for serial crystallography
Presenter: Nicholas Sauter, Lawrence Berkeley National Laboratory
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Lecture 1: The Diffraction Experiment: Crystals, Beams, Images, and Reflections
Topic: The Diffraction Experiment: Crystals, Beams, Images, and Reflections
Presenter: Jim Pflugrath
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Lecture 2: Scaling and Merging
Topic: Scaling and Merging
Presenter: Zbyszek Otwinowski, Professor, UT Southwestern Medical Center
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Lecture 3: CC* - Linking crystallographic model and data quality
Topic: CC* - Linking crystallographic model and data quality
Presenter: Kay Diederichs, Professor, University of Konstanz
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Lecture 5: Data Processing Tools in the SBGrid Collection
Topic: Data Processing Tools in the SBGrid Collection
Presenter: Piotr Sliz, Harvard Medical School/SBGrid Consortium
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Lecture 6: MOSFLM and FRIENDS: Data Processing in the CCP4 suite.
Presenter: Phil Evans, MRC Laboratory of Molecular Biology
Topic: MOSFLM and FRIENDS: Data Processing in the CCP4 Suite
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Topic: HKL3000
Presenter: Zbyszek Otwinowski, UT Southwestern Medical School
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Lecture 8: Principles of data processing with XDS
Presenter: Kay Diederichs, University of Konstanz, Germany
Topic: Principles of data processing with XDS.
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Lecture 9: Processing Twinned and Split Crystals with RLATT
Topic: Processing Twinned and Split Crystals with RLATT
Presenter: Matt Benning, Bruker AXS
Presented as part of:
SBGrid/NE-CAT 2014: Data Processing in Crystallography
June 5-6, 2014
Topic: LightDock: Shedding light into the dark fraction of the protein interactome
Presenters:
Brian Jimenez-Garcia, Ph.D., University Utrecht, and
Jorge Roel, Ph.D., Department of Structural Biology, Protein Design and Modeling group, IBMB-CSIC, Barcelona
Host: Pete Meyer
Recorded on May 18, 2021
MAFFT/MAFFTash: Web services for structure-informed multiple sequence alignment
Topic: MAFFT/MAFFTash: Web services for structure-informed multiple sequence alignment
Presenters: Kazutaka Katoh and Daron Standley, Immunology Frontier Research Center, Osaka University
Host: Andrew Morin
Recorded on July 17, 2014
Makaia Papasergi-Scott, PhD - Structures of metabotropic GABAB receptors
Topic: Structures of metabotropic GABAB receptors
Presenter: Makaia Papasergi-Scott, PhD, Georgios Skiniotis's group, Stanford University
Host: Shaun Rawson
Recorded on July 14, 2020
Matt Jaremko - Uncovering the dynamic states of the human Origin Recognition Complex
Topic: Twist and Pinch, Rock and Roll: Uncovering the dynamic states of the human Origin Recognition Complex
Presenter: Matt Jaremko, Ph.D., Leemor Joshua-Tor's group, Cold Spring Harbor Laboratory
Host: Jason Key
Recorded on December 8, 2020
Md. Mahfuzur Rahman, PhD - Cryo-EM structure of native muscle-type nicotinic acetylcholine receptor
Topic: Cryo-EM structure of native muscle-type nicotinic acetylcholine receptor and inhibition by snake venom toxins
Presenter: Md. Mahfuzur Rahman, PhD, Ryan Hibbs's group, UT Southwestern
Host: Pete Meyer
Recorded on June 22, 2020
Michael Robertson, PhD - GemSpot: A Pipeline for Robust Modeling of Ligands into CryoEM Maps
Topic: GemSpot: A Pipeline for Robust Modeling of Ligands into CryoEM Maps
Presenter: Michael Robertson, PhD, Georgios Skiniotis's group, Stanford University
Host: Pete Meyer
Recorded on June 22, 2020
Topic: Automated atomic modeling for cryo-EM maps.
Presenter: Kiarash Jamali, PhD student, Scheres group, MRC Laboratory of Molecular Biology, Cambridge, UK.
Host: Jason Key
Recorded on: March 14, 2023
For more information on ModelAngelo: https://github.com/3dem/model-angelo
Molecular Biology with Geneious R7
Topic: Geneious R7: A bioinformatics platform for biologists
Presenter: Christian Olsen, Field Application Scientist, Biomatters, Inc.
SBGrid Host: Paul Sanschagrin
Recorded on Oct 3, 2013
Geneious website: http://www.geneious.com/
Topic: MoRDa, an automatic molecular replacement pipeline
Presenter: Andrey Lebedev, Ph.D., Science and Technology Facilities Council, UK
Host: Pete Meyer
Recorded on November 9, 2021
Topic: The recent progress of high-throughput cryo electron microscopy and cryo electron tomography at UCSF
Presenter: Dr. Shawn Zheng, University of California, San Francisco
Host: Shaun Rawson
Recorded on April 29, 2020
MovableType Software for Fast Free Energy-based Virtual Screening
Topic: MovableType Software for Fast Free Energy-based Virtual Screening
Presenter: Lance Westerhoff, Ph.D., QuantumBio, Inc.
Host: Jason Key
Recorded on October 6, 2020