Oct 16 2024
|
cryosparc-tools
a toolkit for interfacing with CryoSPARC.
Updated versions:
4.6.0 | Linux 64
4.6.0 | OS X INTEL
|
Oct 15 2024
|
MemBrain-Seg
a tool for membrane segmentation in 3D for cryo-electron tomography (cryo-ET).
Updated versions:
215b3d5 | Linux 64
215b3d5 | OS X INTEL
|
Oct 11 2024
|
DRGN-AI
a neural network-based algorithm for ab initio heterogeneous cryo-EM reconstruction.
Updated versions:
0.3.1 | Linux 64
|
Oct 10 2024
|
Rosetta
a software suite for modeling macromolecular structures and for predicting and designing protein structures, protein folding mechanisms, and protein-protein interactions.
Updated versions:
3.14 | Linux 64
|
Oct 10 2024
|
SBGrid Installer
an application for managing an SBGrid software installation. Users can choose a subset of applications for installation on their laptops or desktops or configure site installations for clusters, servers or cloud resources. This version is the command-line interface. A graphical version is available for download on the SBGrid wiki : https://sbgrid.org/wiki/client_downloads .
Updated versions:
latest | OS X INTEL
latest | Linux 64
|
Oct 10 2024
|
Warp
a set of tools for cryo-EM and cryo-ET data processing including, among other tools: Warp, M, WarpTools, MTools, MCore, and Noise2Map.
Updated versions:
2.0.0dev29 | Linux 64
|
Oct 09 2024
|
CryoSegNet
Accurate cryo-EM protein particle picking by integrating the foundational AI image segmentation model and specialized U-Net
Updated versions:
1.0.0 | Linux 64
|
Oct 09 2024
|
ShelXle
a cute graphical user interface for SHELXL.
Updated versions:
1.0.1678 | Linux 64
1.0.1260 | Linux 64
1.0.1678 | OS X INTEL
|
Oct 09 2024
|
PHYLIP
a free package of software programs for inferring phylogenies.
Updated versions:
3.698 | Linux 64
3.698 | OS X INTEL
|
Oct 08 2024
|
cryoDRGN
a neural network based algorithm for heterogeneous cryo-EM reconstruction. In particular, the method models a continuous distribution over 3D structures by using a neural network based representation for the volume.
Updated versions:
3.4.1 | Linux 64
|
Oct 04 2024
|
autoPROC
a tool that combines third-party processing programs with new tools for automated data processing of single-sweep, multi-sweep and multi-crystal X-ray diffraction data.
Updated versions:
20240710 | Linux 64
20240710 | OS X INTEL
|
Oct 04 2024
|
XIA2
an expert system for automated reduction of X-Ray diffraction data from macromolecular crystals, making use of existing software (CCP4, XDS, Phenix, CCTBX.) XIA2 is now included with DIALS.
In SBGrid, XIA2 is provided by a few different titles. Run
xia2 --sbapp:l
to see the complete list.
The most recent release can usually be found in the latest release of DIALS.
Updated versions:
3.21.1 | Linux 64
3.21.1 | OS X INTEL
|
Oct 03 2024
|
XDS
(X-ray Detector Software) a software tool for processing single-crystal monochromatic diffraction data recorded by the rotation method.
Updated versions:
20241002 | Linux 64
20241002_x86 | OS X INTEL
20241002_arm | OS X INTEL
|
Oct 03 2024
|
EMAN2
a scientific image processing suite with a particular focus on single particle reconstruction from cryoEM images. EMAN2 is a complete refactoring of the original EMAN1 library and contains the SPARX applications.
Updated versions:
nightly_20230215 | OS X INTEL
nightly | OS X INTEL
2.91 | OS X INTEL
2.31 | OS X INTEL
2.07 | OS X INTEL
nightly_20230215 | Linux 64
nightly | Linux 64
2.91 | Linux 64
2.31 | Linux 64
2.07 | Linux 64
2.99 | OS X INTEL
20211129 | OS X INTEL
2.99 | Linux 64
20211129 | Linux 64
|
Oct 02 2024
|
ChemEM
a tool that utilizes information from Cryo-EM density and state-of-the-art small molecule force fields to dock small molecules into protein targets.
Updated versions:
0.0.3 | Linux 64
|
Oct 02 2024
|
qFit
a collection of programs for modeling multi-conformer protein structures.
Updated versions:
2024.3 | Linux 64
2024.3 | OS X INTEL
|
Oct 02 2024
|
reliontomotools
a set of additional tools for subtomogram analysis in Relion tomo.
Updated versions:
1.0.0 | Linux 64
1.0.0 | OS X INTEL
|
Oct 01 2024
|
GROMACS
a versatile package that performs molecular dynamics of proteins, lipids and nucleic acids.
Updated versions:
2024.2_cu12.2 | Linux 64
2024.2_cu11.5.2 | Linux 64
|
Oct 01 2024
|
CryoSieve
an advanced software solution designed for particle sorting/sieving in single particle analysis (SPA) for Cryogenic Electron Microscopy (cryo-EM).
Updated versions:
1.2.8 | Linux 64
|