Oct 30 2024
|
DeepFRI
Deep functional residue identification
Updated versions:
1.0.0 | Linux 64
|
Oct 30 2024
|
Starparser
a package implemented in Python to manipulate Relion star files including counting, modifying, plotting, and sifting the data.
Updated versions:
1.58 | Linux 64
1.57 | Linux 64
|
Oct 21 2024
|
cryosparc-tools
a toolkit for interfacing with CryoSPARC.
Updated versions:
4.6.0 | OS X INTEL
|
Oct 20 2024
|
SHELX-2013
a set of programs for macromolecular phasing. SHELXC provides a simple and fast way to set up the files for the programs SHELXD (heavy atom location) and SHELXE (phasing and density modification) for macromolecular phasing by the MAD, SAD, SIR and SIRAS methods. hkl2map provides a simple user interface to SHELX and is installed separately.
Updated versions:
2023-1 | OS X INTEL
|
Oct 16 2024
|
cryosparc-tools
a toolkit for interfacing with CryoSPARC.
Updated versions:
4.6.0 | Linux 64
|
Oct 15 2024
|
MemBrain-Seg
a tool for membrane segmentation in 3D for cryo-electron tomography (cryo-ET).
Updated versions:
215b3d5 | Linux 64
215b3d5 | OS X INTEL
|
Oct 10 2024
|
SBGrid Installer
an application for managing an SBGrid software installation. Users can choose a subset of applications for installation on their laptops or desktops or configure site installations for clusters, servers or cloud resources. This version is the command-line interface. A graphical version is available for download on the SBGrid wiki : https://sbgrid.org/wiki/client_downloads .
Updated versions:
latest | Linux 64
|
Oct 10 2024
|
Warp
a set of tools for cryo-EM and cryo-ET data processing including, among other tools: Warp, M, WarpTools, MTools, MCore, and Noise2Map.
Updated versions:
2.0.0dev29 | Linux 64
|
Oct 09 2024
|
ShelXle
a cute graphical user interface for SHELXL.
Updated versions:
1.0.1678 | Linux 64
1.0.1260 | Linux 64
1.0.1678 | OS X INTEL
|
Oct 09 2024
|
PHYLIP
a free package of software programs for inferring phylogenies.
Updated versions:
3.698 | Linux 64
3.698 | OS X INTEL
|
Oct 04 2024
|
autoPROC
a tool that combines third-party processing programs with new tools for automated data processing of single-sweep, multi-sweep and multi-crystal X-ray diffraction data.
Updated versions:
20240710 | OS X INTEL
20240710 | Linux 64
|
Oct 04 2024
|
XIA2
an expert system for automated reduction of X-Ray diffraction data from macromolecular crystals, making use of existing software (CCP4, XDS, Phenix, CCTBX.) XIA2 is now included with DIALS.
In SBGrid, XIA2 is provided by a few different titles. Run
xia2 --sbapp:l
to see the complete list.
The most recent release can usually be found in the latest release of DIALS.
Updated versions:
3.21.1 | Linux 64
3.21.1 | OS X INTEL
|
Oct 03 2024
|
XDS
(X-ray Detector Software) a software tool for processing single-crystal monochromatic diffraction data recorded by the rotation method.
Updated versions:
20241002 | Linux 64
20241002_x86 | OS X INTEL
20241002_arm | OS X INTEL
|
Oct 03 2024
|
EMAN2
a scientific image processing suite with a particular focus on single particle reconstruction from cryoEM images. EMAN2 is a complete refactoring of the original EMAN1 library and contains the SPARX applications.
Updated versions:
nightly_20230215 | OS X INTEL
nightly | OS X INTEL
2.91 | OS X INTEL
2.31 | OS X INTEL
2.07 | OS X INTEL
nightly_20230215 | Linux 64
nightly | Linux 64
2.91 | Linux 64
2.31 | Linux 64
2.07 | Linux 64
2.99 | OS X INTEL
20211129 | OS X INTEL
2.99 | Linux 64
20211129 | Linux 64
|
Oct 02 2024
|
ChemEM
a tool that utilizes information from Cryo-EM density and state-of-the-art small molecule force fields to dock small molecules into protein targets.
Updated versions:
0.0.3 | Linux 64
|
Oct 02 2024
|
qFit
a collection of programs for modeling multi-conformer protein structures.
Updated versions:
2024.3 | Linux 64
2024.3 | OS X INTEL
|
Oct 02 2024
|
reliontomotools
a set of additional tools for subtomogram analysis in Relion tomo.
Updated versions:
1.0.0 | OS X INTEL
1.0.0 | Linux 64
|
Oct 01 2024
|
GROMACS
a versatile package that performs molecular dynamics of proteins, lipids and nucleic acids.
Updated versions:
2024.2_cu12.2 | Linux 64
2024.2_cu11.5.2 | Linux 64
|
