Software Updates

Molprobity

a protein structure analysis platform offering quality validation for 3D structures of proteins, nucleic acids and complexes.

DynDom3D

a program to analyze domain movements in large, multi-chain, biomolecular complexes, useful for any molecule for which two atomic structures are available that represent a conformational change indicating a possible domain movement.

Bsoft

a collection of programs and a platform for the development of software for image processing of electron micrographs, interpretation of reconstructions, molecular modeling, and general image and molecular processing.

DSSR

(Dissecting the Spatial Structure of RNA) a software tool for dissecting the spatial structure of RNA.

CAVER Analyst

a software tool for the calculation, analysis, and real-time visualization of access tunnels and channels in static and dynamic protein structures with an intuitive GUI.

CAVER

a software tool for the analysis and visualisation of tunnels and channels in protein structures. This is the command line version, not the PyMOL plugin version.

Durin

a XDS plugin for reading HDF5 files following the NeXuS format or those written by Dectris Eiger detectors.

OpenBabel

a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.

GROMACS

a versatile package that performs molecular dynamics of proteins, lipids and nucleic acids.