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Supported Applications


  • Description

    a program to analyze domain movements in large, multi-chain, biomolecular complexes, useful for any molecule for which two atomic structures are available that represent a conformational change indicating a possible domain movement.

  • Usage

    To list all executables provided by DynDom3D, run: $ sbgrid-list dyndom3d Copy to clipboard
  • Usage Notes

    Unlike the original DynDom (DynDom1D), this method is blind to atomic bonding and atom type and can, therefore, be applied to biomolecular complexes containing different constituent molecules such as protein, RNA or DNA.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install dyndom3d Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    G. Poornam, A. Matsumoto, H. Ishida, and S.Hayward. 2009. A method for the analysis of domain movements in large biomolecular complexes. Proteins. 76(1): 201-212.

    • *Full citation information available through

  • Keywords


  • Default Versions

    Linux 64:  1.04 (6.8 MB)
    OS X INTEL:  1.04 (2.1 MB)

  • Other Versions

      Linux 64:

      1.01 (10.5 MB)
    • OS X INTEL:

      1.01 (11.7 MB)
  • Developers

    Steven Hayward