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Supported Applications

CAVER

  • Description

    a software tool for the analysis and visualisation of tunnels and channels in protein structures. This is the command line version, not the PyMOL plugin version.

  • Usage

    To list all executables provided by CAVER, run: $ sbgrid-list caver Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install caver Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    E. Chovancova, A. Pavelka, P. Benes, O. Strnad, J. Brezovsky, B. Kozlikova, A. Gora, V. Sustr, M. Klvana, P. Medek, L. Biedermannova, J. Sochor, and J. Damborsky. 2012. CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures. PLOS Comput Biol. 8(10).

    J. Brezovský, B. Kozlíková, and J. Damborský. 2018. Computational Analysis of Protein Tunnels and Channels. Protein Engineering: Methods and Protocols, Methods in Molecular Biology. 1685: 25-42.


    • *Full citation information available through

  • Citation Note

    Additional citations can be found on the CAVER website.

  • Webinars

    CAVER 3.0

    Topic: CAVER 3.0: Analysis of Tunnels in Static and Dynamic Protein Structures
    Presenter: Jan Brezovsky, Ph.D., Team Leader, Loschmidt Laboratories, Czech Republic

    Host: Jason Key
    Recorded on June 13, 2013

  • Keywords

    Analysis

  • Default Versions

    Linux 64:  3.02 (125.2 MB)
    OS X INTEL:  3.02 (125.2 MB)

  • Other Versions

      Linux 64:

      3.01 (120.4 MB)

    • OS X INTEL:

      3.01 (120.4 MB)
    • Common files size: 216.9 MB

  • Developers

    Jiří Damborský, Jan Brezovsky

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