Software Updates

pandas

a library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming language.

pandas is installed as a module within python.

Ghostscript

an interpreter for the PostScript (TM) language. It can display and convert postscript files. Software can be involved with gs command.

IMOD

a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections.

XDSGUI

a GUI (graphical user interface) for XDS designed to help both novice and experienced users; it enables XDS data processing without the command line and supplies additional graphical information in a simple, user-modifiable and user-extensible way. It graphically displays the ASCII and cbf files that XDS writes and can run useful shell commands with a simple mouse click.

USF Gerard Utilities

a Swiss Army knife of crystallography tools. The installation includes the packages from RAVE, SBIN, X-UTIL, VOIDOO, DEJAVU and SPASM.

And includes the following binaries:

• aconio
• cello
• comap
• crave
• essens
• flood
• lsqman
• mama.debug
• mapman
• mave
• moleman2
• o2d
• oops
• prof
• site2rt
• solex
• ssencs
• xpand

Swiss-PdbViewer

an application that provides a user friendly interface allowing you to analyze several proteins at the same time.

SPIDER

(System for Processing Image Data from Electron microscopy and Related fields) a large image processing suite for electron microscopy.

knuspr

a tool that finds the positions of phosphates and bases in electron density maps with a fairly high degree of reliability.

em2em

a program to convert images from/to formats used in the "electron microscopical community" (3DEM)

DSSR

(Dissecting the Spatial Structure of RNA) a software tool for dissecting the spatial structure of RNA.

CrystFEL

a suite of programs for processing diffraction data acquired "serially" in a "snapshot" manner, such as when using the technique of Serial Femtosecond Crystallography (SFX) with a free-electron laser source.