Webinars
What's new at SBGrid: SBGrid Installation Tools
Presenter: Jason Key, SBGrid, Harvard Medical School
Recorded on September 19, 2017
Topic: SBGrid Installation Tools & SBGrid Capsule Environment
Presenters:
Jason Key, Ph.D., SBGrid, Harvard Medical School
Carol Herre, M.Sc., SBGrid, Harvard Medical School
Recorded on February 9, 2021
"Recent Enhancements and Scientific Advancements in the Schrödinger Suite"
Presenter: Woody Sherman, Schrödinger Vice President of Applications Science.
SBGrid Host: Piotr Sliz
Recorded on: June 12, 2012
Schrödinger website: http://www.schrodinger.com
Topic: A basic primer for docking and similarity searching against the ICCB-Longwood databases on the SBGrid Goldfinger cluster
Presenter: Paul Sanschagrin
SBGrid Host: Jason Key
Recorded on March 28, 2013
Topic: Quo Vaids Scipion
Presenter: Pablo Conesa, Senior Software Developer, National Center for Biotechnology
Host: Shaun Rawson
Recorded on April 21, 2020
Topic: Using Scipion for Stream Image Processing at Cryo-EM Facilities
Presenter: José Miguel de la Rosa Trevin, PhD, Scientific Software Engineer, SciLifeLab, Stockholm University, Sweden
Host: Jason Key
Recorded on June 12, 2018
Topic: Scipion 3.0
Presenter: Jose Miguel de la Rosa Trevin, Ph.D., Research Engineer, Science for Life Laboratory, Stockholm University
Host: Jason Key
Recorded on October 20, 2020
Topic: Multiscale Computational Modeling and Visualization with Sculptor
Presenter: Willy Wriggers, Director, biomachina.org;
Professor, Mechanical & Aerospace Engineering
Old Dominion University
Host: Jason Key
Recorded on November 1, 2016
Topic: Experimental phasing and structure solution with SHARP/autoSHARP
Presenter: Clemens Vonrhein Software Developer at Global Phasing Ltd.
Host: Piotr Sliz
Recorded Date June 19, 2012
Topic: New features in SHELX_2013
Presenter: Andrea Thorn, Ph.D., Marie-Curie Fellow, Crystallographic Computing Group, MRC‐LMB, Cambridge, UK
Host: Paul Sanschagrin
Recorded on September 19, 2013
Topic: Protein Structure Determination with Single Particle Electron Microscopy - Computational Challenges
Presenter: Pawel Penczek, Ph.D., Professor and Director, Structural Biology Imaging Center, University of Texas Health Science Center at Houston
Host: Jason Key
Recorded on Jan 20, 2015
Topic: Integrative Structural Biology with SITUS
Presenter: Prof. Willy Wriggers, Old Dominion University
Host: Jason Key
Recorded on March 2, 2021
Willy Wriggers
Professor, Mechanical & Aerospace Engineering, Old Dominion University
Dr. Wriggers earned a Ph.D. in Physics from the University of Illinois, Urbana-Champaign in 1998. He held postdoctoral positions in Electron Microscopy (Scripps Research Institute) as well as Theoretical Chemistry (University of California, San Diego). In 1999 he was appointed Assistant Professor at The Scripps Research Institute. In 2003 he moved to the University of Texas Health Science Center, Houston, where he earned tenure as Associate Professor of Biomedical Informatics and Molecular Medicine. In 2007 he joined the private D. E. Shaw Research laboratory in New York City. In 2014 he returned to an academic position as Frank Batten Chair of Mechanical and Aerospace Engineering at ODU.
Situs Resources for SBGrid users:
Main web site for SBGrid version: http://situs.biomachina.org
Tutorials: http://situs.biomachina.org/ftut.html
Individual tool manuals: http://situs.biomachina.org/fguide.html
Publications: http://situs.biomachina.org/fref.html
Other Situs variants that may not be available in SBGrid: http://situs.biomachina.org/fflavors.html
Topic: Combining Structures from Different Biophysical Origins with Situs
Presenter: Willy Wriggers, Director, biomachina.org, Professor, Mechanical & Aerospace Engineering, Old Dominion University
Host: Jason Key
Recorded on October 4, 2016
Topic: Structural, biophysical, and biochemical studies of SARS-CoV-2 spike variants
Sophie Gobeil, Ph.D., Priyamvada Acharya's group at Duke Human Vaccine Institute
Host: Pete Meyer
Recorded on October 13, 2020
Topic: Spectral Processing Concepts for Biomolecular NMR
Presenter: Frank Delaglio, Ph.D, Marketing Manager, NMR Software, Agilent Technologies
Host: Jason Key
Recorded on November 7, 2013
Topic: SPHIRE: User-friendly pipeline for near-atomic resolution Cryo-EM structure determination with automatic validation mechanisms.
Speaker: Toshio Moriya, Ph.D. Postdoctoral Fellow, Max Planck Institute of Molecular Physiology
Host: Jason Key
Recorded on: October 10, 2017
Topic: SPI at XFEL's and the birth of SFX
Presenter: Filipe R N C Maia, Laboratory of Molecular Biophysics, Uppsala University
Host: Piotr Sliz
Recorded on November 30, 2015
Topic: Deconvolving protein dynamics in solution and crystals with X-ray scattering
Presenter: Steve Meisburger, Ph.D., Nozomi Ando's group, Cornell University
Host: Jason Key
Recorded on April 6, 2021
Topic: TomoAlign: Consideration of sample motion in cryoET
Presenter: José-Jesús Fernéndez, Spanish National Centre for Biotechnology, Group Leader
Host: Jason Key
Recorded on: April 2, 2019
Topic: TomoTwin-cryoet
Presenter: Thorsten Wagner, Ph.D., Project Group Leader - Computational Structural Biology, Max-Planck-Institute of Molecular Physiology
Host: Jason Key
Recorded on November 8, 2022