Join us on May 22nd to hear from Giovanni Bussi from SISSA, Trieste and Massimiliano Bonomi, from the University of Cambridge, on Analyzing and enhancing molecular dynamics simulations with PLUMED.
Analyzing and enhancing molecular dynamics simulations with PLUMED
Tuesday, May 22nd at 12:00pm EDT
Giovanni Bussi -- Associate Professor, SISSA, Trieste, Italy
Massimiliano Bonomi -- Postdoc, University of Cambridge, Vendruscolo Group
Host: Jason Key
For more information on PLUMED, visit the website http://www.plumed.org/, browse the manual, check out Github: http://github.com/plumed, and read these publications:
- PLUMED: A portable plugin for free-energy calculations with molecular dynamics. [Abstract] (arxiv.org/abs/0902.0874)
- PLUMED 2: New feathers for an old bird. [Abstract] (arxiv.org/abs/1310.0980)
Webinar connection instructions: We are now using BlueJeans to ...
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Join us on June 12th to hear from José Miguel de la Rosa Trevin at the SciLifeLab, Stockholm University on Using Scipion for Stream Image Processing at Cryo-EM Facilities.
Using Scipion for Stream Image Processing at Cryo-EM Facilities
Tuesday, June 12th at 12:00pm EDT
José Miguel de la Rosa Trevin, Ph.D.
Scientific Software Engineer, SciLifeLab,
Stockholm Universtiy, Sweden
Host: Jason Key
Abstract: Three dimensional electron microscopy (3DEM) is becoming a very data-intensive field in which vast amounts of experimental images are acquired at high speed. To manage such large-scale projects, we had previously developed a modular workflow system called Scipion (de la Rosa-Trevín et al., 2016). In this seminar I will present an overview of the framework, following by a description of a major extension ...
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Join us on November 14th to hear about the latest updates to EMAN2.2 from Baylor College of Medicine Professor, Steven Ludtke.
- EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
Tuesday, November 14th at 12:00pm EST
Steven Ludtke, Ph.D.
Professor of Biochemistry - Baylor College of Medicine
Co-Director - National Center for Macromolecular Imaging
Co-Director - Center for Computational and Integrative Biomedical Research
EMAN2 has undergone dramatic changes in the last year, both in expanding its capabilities to in-situ (CryoET) segmentation and high-resolution high-speed subtomogram averaging, as well as with traditional single particle analysis. New deep-learning technology in EMAN2 permits automatic segmentation of cellular tomograms as well as highly accurate particle picking in single particle analysis. Even more recently, a novel computational approach based on robust invariants ...
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Our position postings page advertises open positions for postdocs, students, faculty, and staff in SBGrid member laboratories and institutions. Please send brief descriptions to Michelle. Postings will remain online for 60 days
Deaconescu Laboratory
Brown University
POSTDOCTORAL POSITION at Brown University (Structural Biology)
The Deaconescu Lab at Brown University is seeking a postdoctoral
researcher. The laboratory's interest is the stress response and the
interplay between DNA repair and other cellular processes
including transcription and chromatin remodeling, and is focused on
elucidating the function and mechanochemistry of DNA-based
motors using a combination of biochemical, biophysical and
structural techniques. (e.g. X-ray crystallography, small-angle X-ray
scattering, transmission electron microscopy). For examples of
work, please see Deaconescu et al., PNAS (2012), Szyk et al, Cell
(2014), Szyk et al., NSMB (2012 ...
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Join us on September 19th to hear from SBGrid's technical lead Jason Key. Jason will introduce some of the newest tools available to SBGrid users, including our new user environment and installation tools.
What's new at SBGrid: SBGrid Environment and Installation Tools
Tuesday, September 19th at 12:00pm EDT
Jason Key, Ph.D.
Technical Lead, SBGrid Consortium
Lecturer, Harvard Medical School
Webinar connection instructions: We are using the FUZE Meeting application to host our webinars, which is compatible with Mac, Linux, and Windows computers. To connect, follow the Meeting URL and enter the meeting number: