Join us on May 22nd to hear from Giovanni Bussi from SISSA, Trieste and Massimiliano Bonomi, from the University of Cambridge, on Analyzing and enhancing molecular dynamics simulations with PLUMED.
Analyzing and enhancing molecular dynamics simulations with PLUMED
Tuesday, May 22nd at 12:00pm EDT
Giovanni Bussi -- Associate Professor, SISSA, Trieste, Italy
Massimiliano Bonomi -- Postdoc, University of Cambridge, Vendruscolo Group
Host: Jason Key
For more information on PLUMED, visit the website http://www.plumed.org/, browse the manual, check out Github: http://github.com/plumed, and read these publications:
- PLUMED: A portable plugin for free-energy calculations with molecular dynamics. [Abstract] (arxiv.org/abs/0902.0874)
- PLUMED 2: New feathers for an old bird. [Abstract] (arxiv.org/abs/1310.0980)
Webinar connection instructions: We …
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Join us on November 14th to hear about the latest updates to EMAN2.2 from Baylor College of Medicine Professor, Steven Ludtke.
- EMAN2.2 for Single Particle Analysis and In-situ Structural Biology
Tuesday, November 14th at 12:00pm EST
Steven Ludtke, Ph.D.
Professor of Biochemistry - Baylor College of Medicine
Co-Director - National Center for Macromolecular Imaging
Co-Director - Center for Computational and Integrative Biomedical Research
EMAN2 has undergone dramatic changes in the last year, both in expanding its capabilities to in-situ (CryoET) segmentation and high-resolution high-speed subtomogram averaging, as well as with traditional single particle analysis. New deep-learning technology in EMAN2 permits automatic segmentation of cellular tomograms as well as highly accurate particle picking in single particle analysis. Even more …
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Join us on September 19th to hear from SBGrid's technical lead Jason Key. Jason will introduce some of the newest tools available to SBGrid users, including our new user environment and installation tools.
What's new at SBGrid: SBGrid Environment and Installation Tools
Tuesday, September 19th at 12:00pm EDT
Jason Key, Ph.D.
Technical Lead, SBGrid Consortium
Lecturer, Harvard Medical School
Webinar connection instructions: We are using the FUZE Meeting application to host our webinars, which is compatible with Mac, Linux, and Windows computers. To connect, follow the Meeting URL and enter the meeting number:
- Meeting URL: http://fuze.me/35380170
- Meeting Number: 35380170
- Call in number: +1 (201) 479-4595
- You can find international access numbers at …
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Join us on July 25th to hear from Jesse Hopkins, Postdoctoral Researcher at Cornell University will talk about Analyzing Biological Small Angle X-ray Scattering Data Using RAW.
Analyzing Biological Small Angle X-ray Scattering Data Using RAW
Tuesday, July 25th at 12:00pm EDT
Jesse Hopkins, Ph.D.
Postdoctoral Research
Cornell University
Host: Jason Key
Abstract. BioXTAS RAW is a program for analysis of Small-Angle X-ray Scattering (SAXS) data. The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF. It also allows easy processing of inline SEC-SAXS data and data deconvolution using the …
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Tune in on April 11th to hear about the latest enhancements in Movie Making for cryoEM using ChimeraX. Tom Goddard, Programmer/Analyst at the UCSF Resource for Biocomputing, Visualization, and Informatics, will join us to give the presentation.
Movie Making for cryoEM using ChimeraX
Tuesday, April 11th EDT
Tom Goddard
Programmer/Analyst
UCSF Resource for Biocomputing, Visualization, and Informatics
Host: Jason Key
Learn how to make movies showing how molecular structures fit in cryoEM maps using ChimeraX, the next generation version of the UCSF Chimera visualization program. We will make movies that show morphing, ambient occlusion lighting, and density near each fit residue, and will discuss ChimeraX virtual reality capabilities,including 360 degree stereoscopic movie recording.
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