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an image processing framework to obtain 3D models of macromolecular complexes using 3D EM that allows you to execute workflows combining different software tools, while taking care of formats and conversions.

(X-Window-based Microscopy Image Processing Package) a suite of image processing programs primarily aimed at single-particle 3D electron microscopy.

a pipeline for the automated detection of membrane-bound proteins in cryo-electron tomograms. It utilizes the geometry of a pre-segmented membrane to reduce the complexity of the detection task.

is graphical user interface for the CryoFold method, which integrates several computational techniques (MAINMAST, Targeted Molecular Dynamics, MDFF/ReMDFF, and MELD) to determine protein structures and conformational ensembles from cryo-EM density maps.

An image analysis toolkit for the quantification of membrane structures from cryo-EM micrographs

is a Python package to run Rosetta-based protocols for the prediction of the ΔΔG of stability upon mutation of a monomeric protein or the ΔΔG of binding upon mutation of a protein complex and analyze the results.

a software for membrane signal subtraction to facilitate high-resolution cryo-EM reconstruction of membrane proteins embedded in their native membrane environment.

a tool for Cryo-EM micrograph filtering utilizing Fourier space information

is a deep learning based program for enabling centroid prediction of objects in 3D cryo-tomograms.

a multi-GPU accelerated software package that enables real-time fully automated reconstruction of cryoET tomograms in parallel with cryoET data collection.