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Up next:
reproducibility, and validation
Pablo Conesa
Team Leader, Spanish National Research Council
Tuesday, October 10th at 12pm EST
ONGOING
| Tues, October 10, 2023 | Pablo Conesa, Team Leader, Spanish National Research Council ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation |
| Tues, November 14, 2023 | Gabriele Corso, Hannes Staerk, and Bowen Jing, Ph.D. students, MIT Computer Science and Artificial Intelligence Laboratory (CSAIL)
DiffDock |
| Tues, December 12, 2023 | Robin Pearce, Ph.D. student, Yang Zhang's lab, University of Michigan Medical School
DeepFoldRNA |
| Tues, January 9, 2024 | |
| Tues, February 13, 2024 | Björn Forsberg, Ph.D., Postdoctoral Fellow, Karolinska Institutet
OccuPy |
| Tues, March 12, 2024 | |
| Tues, April 9, 2024 | |
| Tues, May 14, 2024 | Prof. Darrin York, Rutgers University
Free energy methods in Amber |
| Tues, June 11, 2024 | Prof. Joseph Davis, Department of Biology, MIT
TomoDRGN |
PAST WEBINARS
2022-2023
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| Tues, Oct 11, 2022 | Jan Kosinski, Ph.D., Group leader, EMBL Hamburg Integrative structural modeling of macromolecular complexes using Assembline |
| Tues, Nov 8, 2022 | Thorsten Wagner, Ph.D., Project Group Leader - Computational Structural Biology, Max-Planck-Institute of Molecular Physiology TomoTwin-cryoet |
| Tues, Dec 13, 2022 | Prof. Thomas Simonson, BIOS Research Group, BIOcomputing and Structure, Ecole Polytechnique and the Centre National de la Recherche Scientifique Proteus software for physics-based protein design |
| Tues, Jan 10, 2023 | Chris Waudby, Ph.D., Group Leader, University College London TITAN: Getting the most from NMR titration experiments with two-dimensional lineshape analysis |
| Tues, Feb 14, 2023 | SPECIAL TIME - 10am EST Prof. Martin Steinegger, Asst Professor of Bioinformatics, Seoul National University Fast and accurate protein structure search with Foldseek |
| Tues, Mar 14, 2023 | Kiarash Jamali, Ph.D. Student, Scheres Laboratory, MRC Laboratory of Molecular Biology ModelAngelo: Automated atomic model building for cryo-EM |
| Tues, Apr 11, 2023 | Gustaf Ahdritz, Ph.D. Student, AlQuraishi Laboratory, Columbia University OpenFold |
| Tues, May 9, 2023 | Kevin Dalton, Ph.D., Hekstra Laboratory, Harvard University Careless: Modern Machine Learning for Diffraction Data |
| Tues, Jun 13, 2023 | Prof. Woonghee Lee, Asst Professor, University of Colorado, Denver POKY |
2021-2022
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| Tues, Sept 28, 2021 | Alessandra Villa, Ph.D., KTH Royal Institute of Technology, Sweden GROMACS |
| Tues, Oct 5, 2021 | Kirill Nadezhdin, Ph.D., and Arthur Neuberger, Ph.D. Columbia University, Alexander Sobolevsky's Laboratory Structural mechanism of heat-induced opening of a temperature-sensitive TRP channel |
| Tues, Oct 12, 2021 | Jim Vincent, Ph.D., Harvard Medical School BioGrids for SBGrid Users |
| Tues, Oct 26, 2021 | Johannes Elferich, Ph.D., University of Massachusetts Medical School, Niko Grigorieff's Laboratory High-throughput in-situ cryo-EM of hematopoietic differentiation |
| Tues, Nov 9, 2021 | Andrey Lebedev, Ph.D., Science and Technology Facilities Council, UK MoRDa |
| Tues, Nov 16, 2021 | Prof. Yi-Wei Chang, Ph.D., Perelman School of Medicine, University of Pennsylvania Cryo-ET reveals structures and potential regulatory mechanisms of the rhoptry secretion system in apicomplexan parasites |
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| Tues, Nov 30, 2021 | Yuntao Liu, Ph.D., University of California, Los Angeles IsoNet |
| Tues, Dec 7, 2021 | Prof. Sjors Scheres, MRC Laboratory of Molecular Biology New developments in RELION-4.0 |
| Tues, Jan 18, 2022 | Jesse Hopkins, Ph.D., Deputy Director, BioCAT Sector 18, Advanced Photon Source BioXTAS RAW: An open source program for bioSAS data analysis |
| Tues, Feb 1, 2022 | Eugene Krissinel, Ph.D., Science and Technology Facilities Council CCP4 Cloud in nutshell and automated structure solution |
| Tues, Feb 8, 2022 | Eugene Krissinel, Ph.D., Science and Technology Facilities Council CCP4 Cloud advanced: interactive MR, EP and model building |
| Tues, Mar 1, 2022 | Thomas Stewart, Ph.D., Schrödinger A new approach to visual presets in PyMOL (upcoming in PyMOL 3.0) |
| SBGrid Spring Series: | Cryo-electron microscopy of membrane proteins: from sample to structure |
| Organizers: |
Prof. Jamaine Davis, Meharry Medical College
Prof. Piotr Sliz, Harvard Medical School Prof. Patrick Sexton, ARC Centre for Cryo-electron Microscopy of Membrane Proteins, Monash University |
| Tues, Mar 15, 2022 | Opening Keynote Prof. Nieng Yan, Princeton University The molecular choreography of Cav/Nav channels – A mission impossible by today’s AI |
| Tues, Mar 22, 2022 | Sample Preparation
From single particle cryoEM to MicroED, tomography and FIB milling. Panel discussion with: Sara Weaver, Ph.D., University of California, Los Angeles Lisa Eshun-Wilson, Ph.D., Scripps Research William Nicolas, Ph.D., Caltech |
| Tues, Mar 29, 2022 | Single Particle CryoEM: from data to structure
Shaun Rawson, Ph.D., Harvard Medical School - Effective on-the-fly and downstream processing of CryoEM data Tom Goddard, UCSF Resource for Biocomputing, Visualization, and Informatics - Using AlphaFold protein structures in ChimeraX for cryoEM modeling |
| Tues, Apr 5, 2022 | USNC/Cr Database
11-2PM EDT - SBGrid Workshop, Separate Registration at https://www.nationalacademies.org/event/04-05-2022/sbgrid-consortium |
| Tues, Apr 12, 2022 | Regional CryoEM infrastructure in the United States
Panel discussion moderated by Melissa Chambers, Ph.D., Vanderbilt University with: Prof. Elizabeth Wright, University of Wisconsin-Madison Caleigh Azumaya, Ph.D., Fred Hutch Prof. Craig Yoshioka, Pacific Northwest Cryo-EM Center Robert Grassucci, Columbia University |
| Tues, Apr 19, 2022 | Special Lecture
Prof. Melanie Ohi, University of Michigan CryoEM analysis of membrane spanning complexes |
| Tues, Apr 26, 2022 | Closing Keynote Prof. Chris Tate, MRC Laboratory of Molecular Biology Insights into GPCR activation from cryo-EM structures |
2020-2021
| Tues, Sept 15, 2020 | Prof. Daniel Minor, University of California, San Francisco K2P channel gating caught in the act: asymmetric pinching and dilation of a potassium channel selectivity filter |
| Tues, Sept 22, 2020 | Daniel Wrapp, Graduate student, Jason McLellan's lab The University of Texas at Austin Structural insights into SARS-CoV-2 S and implications for therapeutic development |
| Tues, Sept 29, 2020 | Prof. Qing Fan, Columbia University Cryo-EM structure of human GABAB receptor |
| Tues, Oct 6, 2020 | Lance Westerhoff, Ph.D., QuantumBio, Inc. MovableType Software for Fast Free Energy-based Virtual Screening |
| Tues, Oct 13, 2020 | From Priyamvada Acharya's group at Duke Human Vaccine Institute Sophie Gobeil, Ph.D. Structural, biophysical, and biochemical studies of SARS-CoV-2 spike variants |
| Kartik Manne, Ph.D. Structural studies on HIV-1 Env for vaccine design | |
| Tues, Oct 20, 2020 | Jose Miguel de la Rosa Trevin, Ph.D., Research Engineer, Science for Life Laboratory, Stockholm University Scipion 3.0 |
| Tues, Oct 27, 2020 | Markus Stabrin, Max Planck Institute of Molecular Physiology TranSPHIRE |
| Tues, Nov 3, 2020 | Vicky Higman, Ph.D., Research Fellow, University of Leicester CcpNmr Analysis Version 3: Assign & Screen |
| Tues, Nov 10, 2020 | POSTPONED - Yilai Li, Ph.D., Research Fellow, University of Michigan CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks |
| Tues, Nov 17, 2020 | Radhika Malik, Ph.D., Assistant Professor, Icahn School of Medicine at Mt. Sinai Cryo-EM Structures of DNA Polymerase Zeta in Translesion DNA Synthesis |
| Rinku Jain, Ph.D., Assistant Professor, Icahn School of Medicine at Mt. Sinai Cryo-EM Structure and Dynamics of DNA Polymerase Delta in High-Fidelity DNA Synthesis | |
| Tues, Dec 1, 2020 | Vera Moiseenkova-Bell, Ph.D., University of Pennsylvania Perelman School of Medicine Structural insights into TRP channels gating |
| Tues, Dec 8, 2020 | Matt Jaremko, Ph.D., Leemor Joshua-Tor's group, Cold Spring Harbor Laboratory Twist and Pinch, Rock and Roll: Uncovering the dynamic states of the human Origin Recognition Complex |
| Tues, Dec 15, 2020 | Prof. Lejla Zubcevic, University of Kansas Medical Center The role of the cytoplasmic inter-protomer interface in thermoTRPV channel gating |
| Tues, Jan 19, 2021 | Benjamin Himes, Ph.D., University of Massachusetts Medical School Multi-scale classification of the floppy bits; using biological priors in emClarity |
| Tues, Jan 26, 2021 | Rubén Sánchez Garcia, Ph.D., The National Centre for Biotechnolgy, Spanish National Research Council DeepEMhancer: exploiting previous knowledge to enhance map visualization |
| Tues, Feb 2, 2021 | Fabian Schoenfeld, Ph.D., Max Planck Instiutute of Molecular Physiology Computing 2D class averages on a single machine using GPU ISAC |
| Tues, Feb 9, 2021 | Jason Key, Ph.D., SBGrid, Harvard Medical School SBGrid Installation Tools Carol Herre, M.Sc., SBGrid, Harvard Medical School SBGrid Capsule Environment |
| Tues, Feb 16, 2021 | Paul Emsley, Ph.D., MRC Laboratory of Molecular Biology Coot |
| Tues, Feb 23, 2021 | Yilai Li, Ph.D., University of Michigan CryoAssess: Automatic data assessment for cryoEM by pretrained neural networks |
| Tues, Mar 2, 2021 | Prof. Willy Wriggers, Old Dominion University, Integrative Structural Biology with SITUS |
| Tues, Mar 9, 2021 | Florent Delhommel, Ph.D., Michael Sattler's group, Technical University of Munich, Structural characterization of a new co-chaperone involved in client-transfer between heat shock proteins |
| Tues, Mar 16, 2021 | Prof. Marcos Sotomayor, Ohio State University The Molecular Machinery of Hearing |
| Tues, Mar 23, 2021 | Woody Sherman, Ph.D., Silicon Therapeutics Physics-Driven Discovery of SNX281, a Novel Small Molecule Sting Agonist in Clinical Trials for Solid Tumors or Lymphoma |
| Tues, Mar 30, 2021 | Prof. Daniela Fera, Swarthmore College Uncovering an Allosteric Site Critical for the Interaction between B-Raf and MEK Kinases and Downstream MAPK Signaling |
| Tues, Apr 6, 2021 | Steve Meisburger, Ph.D., Nozomi Ando's group, Cornell University Deconvolving protein dynamics in solution and crystals with X-ray scattering |
| Tues, Apr 13 | Jason Key, Ph.D., SBGrid, Harvard Medical School New SBGrid GUI-based software installation manager |
| Tues, Apr 20, 2021 | Dr. Dhirendra Simanshu, NCI RAS Initiative, Frederick National Laboratory for Cancer Research Structural and mechanistic insights into the RAS biology |
| Tues, Apr 27, 2021 | Prof. Evris Gavathiotis, Albert Einstein College of Medicine Conformations, dynamics and allostery in targeting pro-apoptotic BAX |
| Tues, May 4, 2021 | Prof. Yoel Shkolnisky, and Amitay Eldar, Ph.D., Tel Aviv University KLT picker |
| Tues, May 11, 2021 | Steven Ludtke, Baylor College of Medicine EMAN2 |
| Tues, May 18, 2021 | Brian Jimenez-Garcia, Ph.D., University Utrecht, and Jorge Roel, Ph.D., Department of Structural Biology, Protein Design and Modeling group, IBMB-CSIC, Barcelona LightDock: Shedding light into the dark fraction of the protein interactome |
| Tues, Jun 8, 2021 | Daniel Castaño Díez, Ph.D., Biozentrum, University of Basel Dynamo |
| Tues, Jun 29, 2021 | Prof. Alexandre Bonvin, University Utrecht HADDOCK |
2019-2020
| Tues, Sept. 24, 2019 | Tristan Croll, Ph.D., ISOLDE: Bringing structural biology to life | |
| Tues, Oct. 8, 2019 | Nigel Moriarty, Ph.D., Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix | |
| Tues, Nov. 2, 2019 | Prof. Steven Ludtke, In-situ and in-vitro subtomogram averaging to subnanometer resolution using EMAN2.3 | |
| Tues, Mar 24, 2020 | Dr. James Vincent, SBGrid / Harvard Medical School Using the SBGrid Software Client for Remote Work | |
| Fri, Mar 27, 2020 | Dr. Pete Meyer, SBGrid / Harvard Medical School Remote work and structural biology computing | |
| Tues, Mar 31, 2020 | Dr. Tom Terwilliger, Los Alamos National Laboratory Density modification and model building with cryo-EM maps | |
| Fri, Apr 3, 2020 | Dr. Pavel Afonine, Berkeley Lab Atomic model refinement and validation in Phenix | |
| Tues, Apr 7, 2020 | Dr. Dorothee Liebschner, Berkeley Lab Map Sharpening; Model Building; other cryo-EM tools in Phenix | |
| Fri, Apr 9, 2020 | No webinar today -- we'll be back on Tuesday | |
| Tues, Apr 14, 2020 | Dr. Pavel Afonine, Berkeley Lab Atomic model, map and model-to-map fit validation | |
| Fri, Apr 17, 2020 | Prof. Daniel Panne, University of Leicester Structural insights into genome folding by CTCF and cohesin | |
| Tues, Apr 21, 2020 | Dr. Pablo Conesa, National Center for Biotechnology Quo Vadis Scipion | |
| Fri, Apr 24, 2020 | Dr. Tristan Croll, Cambridge Institute for Medical Research ISOLDE | |
| Tues, Apr 28, 2020 | Dr. Shawn Zheng, University of California, San Francisco The recent progress of high-throughput cryo electron microscopy and cryo electron tomography at UCSF | |
| Fri, May 1, 2020 | Trainee Presentations (10 min each with Q&A) Goran Bajic, PhD, Stephen Harrison's group, Harvard Medical School - Structure-guided influenza virus antigen engineering focuses immune responses Ryan Feathers, Chris Fromme's group, Cornell University - Structural analysis of regulated Ypt6 (Rab6) activation by the Ric1/Rgp1 complex | |
| Tues, May 5, 2020 | Dr. Kay Diederichs, Universität Konstanz Crystallographic data processing with XDS, using XDSGUI | |
| Fri, May 8, 2020 | SBGrid Technology Tutorial Carol Herre, Software Release Engineer, SBGrid/Harvard Medical School - Introduction to SBGrid Capsules Dr. Jason Key, Assoc Director of Technology & Innovation, SBGrid/Harvard Medical School - Sneak Peek: SBGrid Installer v2 | |
| Tues, May 12, 2020 | Kelly Brock, PhD and Thomas Hopf, PhD, Laboratory of Debora Marks, Harvard Medical School EVCouplings | |
| Fri, May 15, 2020 | Ellen Zhong, Bonnie Berger's Lab, MIT CryoDRGN: Deep generative models for reconstructing heterogeneous protein structures from cryo-EM | |
| Tues, May 19, 2020 | Trainee Presentations (10 min each with Q&A) Mayukh Chakrabarti, Sandra Gabelli's group, Johns Hopkins University - Dynamic Allostery in PI3Kɑ activation: A computational approach Liron David, PhD, Hao Wu's group, Boston Children's Hospital - Assembly Mechanism of the CBM signalosome Mike Fenwick, PhD, Steve Ealick's group, Cornell University - Structural basis of substrate selectivity of viperin, an antiviral radical SAM enzyme | |
| Fri, May 22, 2020 | Dr. Colin Palmer, Science and Technology Facilities Council CCP-EM: software for cryo-EM | |
| Tues, May 26, 2020 | Prof. Karin Reinisch, Yale School of Medicine Structural insights into interorganelle lipid transport | |
| Fri, May 29, 2020 | Dr. Thorsten Wagner, Max-Planck-Institute of Molecular Physiology crYOLO and its utilization in feedback guided real-time processing | |
| Tues, Jun 2, 2020 | Dari Kimanius, Ph.D., MRC Laboratory of Molecular Biology RELION: Exploiting prior knowledge about biological macromolecules in cryo-EM structure determination | |
| Tues, Jun 9, 2020 | Prof. Steve Reichow, Portland State University Connexin-46/50 gap junction channels in a dynamic lipid environment resolved by CryoEM at 1.9 Å | |
| Tues, Jun 16, 2020 | Prof. Chris Hill, University of Utah School of Medicine Structural insights to the mechanism of AAA unfoldases | |
| Tues, Jun 23, 2020 | Trainee Presentations (10 min each with Q&A) Michael Robertson, PhD, Georgios Skiniotis's group, Stanford University - GemSpot: A Pipeline for Robust Modeling of Ligands into CryoEM Maps Md. Mahfuzur Rahman, PhD, Ryan Hibbs's group, UT Southwestern - Cryo-EM structure of native muscle-type nicotinic acetylcholine receptor and inhibition by snake venom toxins | |
| Tues, Jun 30, 2020 | Evan Worden, Cynthia Wolberger's Laboratory, Johns Hopkins University School of Medicine Mechanisms of crosstalk between histone ubiquitination and methylation | |
| Tues, Jul 7, 2020 | Tom Goddard, University of California, San Francisco, Resource for Biocomputing, Visualization, and Informatics Making Augmented Reality Videos with ChimeraX | |
| Tues, Jul 14, 2020 | Lightning Talks (15 min each with Q&A) Makaia Papasergi-Scott, PhD, Georgios Skiniotis's group, Stanford University - Structures of metabotropic GABAB receptors Q&A with SBGrid Technical Team: | |
| Tues, Jul 21, 2020 | Prof. Brent Nannenga, Arizona State University MicroED methodology and application | |
| Tues, Jul 28, 2020 | Michael Sheedlo, PhD, Vanderbilt University, Borden Lacy's group Structural Characterization of Bacterial Translocases |
2018-2019
| Tues, Oct 2, 2018 | Lance Westerhoff, Ph.D., XModeScore: using crystallography to determine protonation states, fragment binding modes, and flip-states |
| Tues, Nov 6, 2018 | Sjors Scheres, Ph.D., RELION-3: new tools for automated high-resolution cryo-EM structure determination |
| Tues, Dec 4, 2018 | Nicholas Pearce, Ph.D., PanDDA: extracting ligand-bound protein states from conventionally uninterpretable crystallographic electron density |
| Tues, Jan 22, 2019 | Thomas Grant, Ph.D., DENSS: Ab Initio Electron Density Maps from Biological SAXS Data |
| Tues, Feb 26, 2019 | Tristan Bepler, Ph.D., Topaz: particle picking with positive-unlabeled learning |
| Tues, Apr 2, 2019 | Prof. Jose-Jesus Fernandez, TomoAlign: Consideration of sample motion in cryoET |
| Tues, May 28, 2019 | Thorsten Wagner, Ph.D., Fast, accurate and easy particle picking with crYOLO |
| Tues, Jul 23, 2019 | Colin Palmer, Ph.D., Model building and validation in CCP-EM |
2017-2018
| Tues, Sept 19, 2017 | Jason Key, Ph.D., What's new at SBGrid: SBGrid Environment and Installation Tools |
| Tues, Oct 10, 2017 | Prof. Toshio Moriya Ludtke, SPHIRE: User-friendly pipeline for near-atomic resolution Cryo-EM structure determination with automatic validation mechanisms |
| Tues, Nov 14, 2017 | Prof. Steven Ludtke, EMAN2.2 for Single Particle Analysis and In-situ Structural Biology |
| Tues, Dec 5, 2017 | Frank Delaglio, Ph.D., Concepts in Spectral Processing of Conventional and Non-Uniformly Sampled NMR Data |
| Tues, Dec 12, 2017 | Frank Delaglio, Ph.D., Processing of Conventional and Non-Uniformly Sampled NMR Data with NMRPipe |
| Tues, Mar 27, 2018 | Prof. Michael Cianfrocco, Software tools to manage cryo-EM jobs on the cloud |
| Tues, Apr 3, 2018 | Woonghee Lee, Ph.D., NMRFAM-Sparky |
| Tues, May 22, 2018 | Giovanni Bussi, Ph.D., Analyzing and enhancing molecular dynamics simulations with PLUMED |
| Tues, Jun 12, 2018 | Jose Miguel de la Rosa Trevin, Using Scipion for Stream Image Processing at Cryo-EM Facilities |
2011-2017
| Sept 27, 2011 | Jason Vertrees,Ph.D. Hints, Tips and New Features for PyMOL v1.4 |
| Oct 31, 2011 | Daniel O'Donovan, Ph.D. Low Resolution refinement with DEN |
| Nov 11, 2011 | Kevin Keating, Ph.D. RCrane: Semi-automated RNA model building within Coot |
| Jan 9, 2012 | Wladek Minor, Ph.D. HKL2000 |
| Feb 27, 2012 | Tim Stevens, Ph.D. CcpNmr SpecView and ChemBuild: the first next-generation CCPN software |
| Mar 13, 2012 | Jose-Maria Carazo, Ph.D. Primer on the XMIPP software suite: its contribution to 3-dimensional electron microscopy and future directions |
| Apr 23, 2012 | Randy Read,Ph.D. Extending the reach of molecular replacement in Phaser |
| Jun 12, 2012 | Woody Sherman, Ph.D. Recent Enhancements and Scientific Advancements in the Schrödinger Suite |
| Jun 19, 2012 | Clemens Vornhein, Ph.D. Experimental phasing and structure solution with SHARP/autoSHARP |
| Oct 4, 2012 | James Chen, Ph.D. PARTICLE: an Integrated Computing Platform for Single-Particle Electron Microscopy |
| Nov 1, 2012 | Ronan Keegan, Ph.D. What's new in CCP4 6.3.0 |
| Jan 24, 2013 | Stuart McNicholas, Ph.D. The CCP4 Molecular Graphics Program (CCP4-MG) |
| Feb 7, 2013 | Thomas Goddard, Ph.D. Analyzing Molecular Assemblies with UCSF Chimera |
| Apr 18, 2013 | Graeme Winter, Ph.D. Automated Data Analysis with xia2 |
| Jun 13, 2013 | Jan Brezovsky, Ph.D. CAVER 3.0: Analysis of Tunnels in Static and Dynamic Protein Structures |
| July 11, 2013 | Jim Procter, Ph.D. Creating and analyzing multiple sequence alignments with the Jalview Desktop Application |
| Sept 19, 2013 | Andrea Thorn, Ph.D. New features in SHELX_2013 |
| Oct 3, 2013 | Christian Olsen, Ph.D. Geneious R7: A bioinformatics platform for biologists |
| Nov 7, 2013 | Frank Delaglio, Ph.D. Spectral Processing Concepts for Biomolecular NMR |
| Nov 14, 2013 | Frank Delaglio, Ph.D. Introduction to NMR Spectral Processing with NMRPipe |
| Dec 5, 2013 | Homayoun Valafar, Ph.D. Structure Validation of Proteins using REDCAT |
| Feb 6, 2014 | Wladek Minor, Ph.D. HKL-2000/HKL-3000: Toward the Future of Structural Biology |
| Mar 21, 2014 | Thomas Grant, Ph.D. SAXS Part I: Introduction to Biological Small Angle Scattering |
| Apr 10, 2014 | Matthew Baker, Ph.D. Modeling Macromolecular Structures with Gorgon |
| May 13, 2014 | Nat Echols, Ph.D. Refinement of challenging structures with Rosetta and Phenix |
| June 26, 2014 | Xiang-Jun Lu, Ph.D. DSSR, a new 3DNA program for Defining the Secondary Structures of RNA from three-dimensional coordinates |
| July 17, 2014 | Daron Standley, Ph.D. MAFFT/MAFFTash: Web services for structure-informed multiple sequence alignment |
| Sept 9, 2014 | Christian Olsen, Ph.D. Geneious R7: Sequence Analysis Tool for Biologists |
| Nov 18, 2014 | Thomas Grant, Ph.D. Advanced Applications of Biological Small Angle Scattering |
| Feb 17, 2015 | Harry Powell, Ph.D. iMosflm - a tool for data reduction |
| Mar 24, 2015 | Sjors Scheres, Ph.D. RELION |
| Apr 14, 2015 | Steven Ludtke, Ph.D. A quick introduction to EMAN2.1 for CryoEM Single Particle Analysis |
| May 19, 2015 | Erek Lindahl, Ph.D. Molecular Simulations with GROMACS: Possibilities and Pitfalls |
| July 7, 2015 | Woody Sherman, Ph.D. Schrodinger Small Molecule Suite |
| July 14, 2015 | Thomas White, Ph.D. CrystFEL - data processing for serial crystallography |
| Sept 8, 2015 | Prof. Alexandre Bonvin Modelling biomolecular complexes using HADDOCK: local vs server mode. |
| Sept 22, 2015 | Lance Westerhoff, Ph.D. Phenix/DivCon: accurate macromolecular crystallographic refinement using linear scaling, semiempirical quantum-mechanics |
| Nov 10, 2015 | Woody Sherman, Ph.D. Docking Tools within the Schrodinger Suite |
| Nov 17, 2015 | Graeme Winter, Ph.D. DIALS |
| Jan 12, 2016 | Woody Sherman, Ph.D. The role of water molecules in protein preparation, docking, and scoring |
| Jan 26, 2016 | Roberto Tejero, Ph.D. PDBStat: Features for NMR structure and constraint satisfaction analysis |
| Feb 9, 2016 | Jamse Foadi, Ph.D. Assembling data from multiple crystals with BLEND |
| Mar 8, 2016 | Raj Pannu, Ph.D. Automated macromolecular structure solution from SAD and MR-SAD experiments with Crank2 |
| Mar 29, 2016 | Jas Bhachoo, Ph.D. The Importance of Protein Preparation for Modeling Applications |
| Apr 26, 2016 | Daniel Rigden, Ph.D. AMPLE: a pipeline for unconventional Molecular Replacement |
| May 10, 2016 | Gunnar Schroeder, Ph.D. DireX - Cross-validated Real-space Refinement to Density Map |
| June 21, 2016 | Ivet Behar, Ph.D. Elastic Network Models and ProDy for Bimolecular Systems Dynamics |
| July 26, 2016 | Christian Olsen, Ph.D. Geneious (Custom BLAST, workflow builder, annotation tools, CRISPER tools) |
| Sept 13, 2016 | Daniel Cappell, Ph.D. Communicating your research results using PyMOL |
| Oct 4, 2016 | Prof. Willy Wriggers Combining Structures from Different Biophysical Origins with Situs |
| Oct 11, 2016 | Ishita Aloni, Ph.D. Protein Ligand Database |
| Nov 1, 2016 | Prof. Willy Wriggers Multiscale Computational Modeling and Visualization with Sculptor |
| Dec 6, 2016 | Abhishek Singharoy,Ph.D. Structure Determination of a Cell Organelle with a Computational Microscope |