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Supported Applications

upside2-md

  • Description

    Ultra-fast, coarse-grained molecular dynamics (MD)

  • Usage

    To list all executables provided by upside2-md, run: $ sbgrid-list upside2-md Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install upside2-md Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. M. Jumper, N. F. Faruk, K. F. Freed, and T. R. Sosnick. 2018. Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics. PLoS computational biology. 14(12): e1006342.


    • *Full citation information available through

  • Keywords

    Computational Chemistry

  • Default Versions

    Linux 64:  1.0.0_9476137 (9.0 GB)
    OS X INTEL:  1.0.0_9476137 (2.5 GB)

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