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SBGridTV

Supported Applications

ARP/wARP

  • Description

    an interpretation of crystallographic electron density maps and automatic construction and refinement of macromolecular models.

  • Usage Notes

    At the request of the developer, this software is licensed on a per-user basis. To enable ARP/wARP in the SBGrid environment, each user should:

    - visit the ARP/wARP website.
    - download any of the current versions via your web browser.
    - in the shell run 'sbgrid-register -r path/to/the/arp_warp-file-you-downloaded'.
    - open a new terminal to utilize the newly registered software title.

    For detailed instructions, please check sbgrid.org/wiki/arp_warp.

  • Primary Citation*

    G. G. Langer, S. X. Cohen, V. S. Lamzin, and A. Perrakis. 2008. Automated macromolecular model building for X-ray crystallography using ARP/ wARP version 7. Nat Protoc. 3(7): 1171-1179.


    • *Full citation information available through

  • Citation Note

    In addition to citing the primary citation listed below, please cite the applications of ARP/ wARP that you have used. The complete citation list is in the ARP/wARP manual.

  • Tales

    Better, Faster, Stronger, More

    Better, Faster, Stronger, More

    It took Victor Lamzin nearly a year to solve his first structure, an 800-residue enzyme formate dehydrogenase. Later, as a post-doc, he asked his supervisor to let him re-solve it, but this time in just 2 months.

    Lamzin, now a group leader and the Deputy Head of the Hamburg Unit of the European Molecular Biology Laboratory, did it. “That's when I realized things could be done even quicker than that. I realized that much of the experience I had garnered and what I'd deciphered from reading the literature and talking to colleagues could be put into software,” says Lamzin. “Especially the boring, repetitive things.”

    While Lamzin had scant knowledge of computer programming—in fact, he says, scant knowledge of crystallography—he dove in anyway. After all ...

    Read More.
  • Keywords

    Crystallography

  • Default Versions

    Linux 64:  7.6
    OS X INTEL:  7.6

  • Other Available Versions

      Linux 32:

      7.3, 7.2, 7.1.1, 6.1.1
    • Linux 64:

      7.5-2
    • OS X INTEL:

      7.5-2
    • powermac:

      7.1.1, 7.0.1, 6.1.1
  • Developers

    Philipp Heuser, Victor Lamzin, Anastassis Perrakis.

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