Supported Applications
DeepFRI
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Description
Deep functional residue identification
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Usage
To list all executables provided by DeepFRI, run:$ sbgrid-list deepfri
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Usage Notes
SBGrid curated DeepFRI provides the following callable programs. Note that we have aliased predict.py to predict_DeepFRI.py to prevent conflicts with existing programs of the same name.
predict_DeepFRI.py
train_DeepFRI.py
viz_gradCAM.py
python.deepfri
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install deepfri
Available operating systems: Linux 64 -
Primary Citation*
Gligorijević V, P. D. Renfrew, T. Kosciolek, J. K. Leman, D. Berenberg, T. Vatanen, C. Chandler, B. C. Taylor, I. M. Fisk, H. Vlamakis, R. J. Xavier, R. Knight, K. Cho, and R. Bonneau. 2021. Structure-based protein function prediction using graph convolutional networks. Nature communications. 12(1): 3168.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  1.0.0 (6.2 GB)
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Developers
P. Douglas Renfrew, Ramnik J Xavier, Rob Knight, Ian M Fisk, Richard Bonneau, Vladimir Gligorijevic, Valentyn Bezshapkin