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UGENE is a free open-source bioinformatics software for macOS, and Linux.

a collection of cheminformatics and machine-learning software written in C++ and Python.

is an implementation of the Noise2Noise algorithm specifically designed for cryoET data denoising. The software streamlines integration with AreTomo3 and provides automated tomogram selection for training and inference transition decisions to avoid overdenoising artifacts. It can operate during live data collection, either applying pre-trained models or training new 3D denoising models from scratch using CTF-deconvolved tomograms.

a multi-GPU accelerated software package that enables real-time fully automated reconstruction of cryoET tomograms in parallel with cryoET data collection.

a software suite for multidimensional NMR and 3D structure calculation of biomolecules.

a flexible dynamic language appropriate for scientific and numerical computing with performance comparable to traditional statically-typed languages.

a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.

(Sequence Alignment/Map) a generic format for storing large nucleotide sequence alignments that provides various utilities for manipulating alignments, including sorting, merging, indexing and generating alignments in a per-position format.

an electronic structure program package that is a flexible, efficient, and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules.

an application for managing an SBGrid software installation. Users can choose a subset of applications for installation on their laptops or desktops or configure site installations for clusters, servers or cloud resources. This version is the command-line interface. A graphical version is available for download on the SBGrid wiki : https://sbgrid.org/wiki/client_downloads .