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Supported Applications

Xmipp

  • Description

    (X-Window-based Microscopy Image Processing Package) a suite of image processing programs primarily aimed at single-particle 3D electron microscopy.

  • Usage

    To list all executables provided by Xmipp, run: $ sbgrid-list xmipp Copy to clipboard

  • Usage Notes

    To configure the installation for submission to a local cluster, you should:

    • put your config_launch.py or config_launch_sge.py file in /programs/local/xmipp.
    • add the XMIPP_PARALLEL_LAUNCH environment variable pointing to your local cluster submission configuration.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install xmipp Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    C. Sorzanoa, R. Marabini, J. Velázquez-Muriel, J. Bilbao-Castro, S. Scheres, J. Carazo, and A. Pascual-Montano. 2004. XMIPP: a new generation of an open-source image processing package for electron microscopy. J Struct Biol. 148(2): 194-204.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  3.1 (902.2 MB)
    OS X INTEL:  3.1 (1.3 GB)

  • Other Versions

      Linux 64:

      2.4_2 (82.2 MB) , 3.0.1 (811.4 MB)

    • OS X INTEL:

      3.0.1 (772.1 MB)

  • Developers

    Biocomputing Unit CNB-CSIC

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