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Supported Applications

topaz-filament

  • Description

    a program with added support for filament start-end coordinate picking (new options -f, -fp and -fl in the extract command extract.py) in Topaz, for subsequent helical reconstruction in RELION.

  • Usage

    To list all executables provided by topaz-filament, run: $ sbgrid-list topaz-filament Copy to clipboard

  • Usage Notes

    The executable in this version is "topaz-filament".

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install topaz-filament Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    T. Bepler, A. Morin, M. Rapp, J. Brasch, L. Shapiro, and A. J. N. &. B. Berger. 2019. Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs. Nature Methods. 16: 1153-1160.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  20220325 (4.6 GB)

  • Developers

    Tristan Bepler, Sjors Scheres, Alex J. Noble

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