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SBGridTV

Supported Applications

TomoAlign

  • Description

    programs for cryo-tomography tilt-series alignment and subsequent tomographic reconstruction that take into consideration beam-induced sample motion, modeled by means of polynomial surfaces. TomoAlign comprises: 1) tomoalign, for alignment, to determine the basic parameters of the images (rotation, magnification, tilt) along with the polynomial coefficients that model the motion; 2) tomorec to calculate the tomogram from the tilt-series and takes into account the motion estimated during the alignment; 3) auxiliary programs to analyze, transform, or scale the motion parameters.

  • Primary Citation*

    J. J. Fernández, S. Li, T. A. M. Bharat, and D. A. Agard. 2018. Cryo-tomography tilt-series alignment with consideration of the beam-induced sample motion. Journal of Structural Biology. 202(3): 200-209.


    • *Full citation information available through

  • Default Versions

    Linux 64:  20170822

  • Developers

    Jose-Jesus Fernandez.
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