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Supported Applications

Tardis

  • Description

    a neural network-based segmentation tool that automates the analysis of cytoskeletal structures in electron microscopy data accurately distinguishing individual filaments and membranes in complex cellular environments.

  • Usage

    To list all executables provided by Tardis, run: $ sbgrid-list tardis Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install tardis Copy to clipboard Available operating systems: Linux 64
  • Primary Citation*

    R. Kiewisz, G. Fabig, W. Conway, J. Johnston, V. A. Kostyuchenko, C. Bařinka, O. Clarke, M. Magaj, H. Yazdkhasti, F. Vallese, S.-M. Lok, S. Redemann, T. Müller-Reichert, and &. T. Bepler. 2024. Accurate and fast segmentation of filaments and membranes in micrographs and tomograms with TARDIS. BioRXiv.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  0.3.9 (5.6 GB)

  • Developers

    Robert Kiewisz, Tristan Bepler

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