Supported Applications
Tardis
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Description
a neural network-based segmentation tool that automates the analysis of cytoskeletal structures in electron microscopy data accurately distinguishing individual filaments and membranes in complex cellular environments.
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Usage
To list all executables provided by Tardis, run:$ sbgrid-list tardis
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install tardis
Available operating systems: Linux 64 -
Primary Citation*
R. Kiewisz, G. Fabig, W. Conway, J. Johnston, V. A. Kostyuchenko, C. Bařinka, O. Clarke, M. Magaj, H. Yazdkhasti, F. Vallese, S.-M. Lok, S. Redemann, T. Müller-Reichert, and &. T. Bepler. 2024. Accurate and fast segmentation of filaments and membranes in micrographs and tomograms with TARDIS. BioRXiv.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  0.3.9 (5.6 GB)
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Developers
Robert Kiewisz, Tristan Bepler