Supported Applications

Tardis

Description

a neural network-based segmentation tool that automates the analysis of cytoskeletal structures in electron microscopy data accurately distinguishing individual filaments and membranes in complex cellular environments.
Usage
To list all executables provided by Tardis, run: $ sbgrid-list tardis
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install tardis Available operating systems: Linux 64
Primary Citation*

R. Kiewisz, G. Fabig, W. Conway, J. Johnston, V. A. Kostyuchenko, C. Bařinka, O. Clarke, M. Magaj, H. Yazdkhasti, F. Vallese, S.-M. Lok, S. Redemann, T. Müller-Reichert, and &. T. Bepler. 2024. Accurate and fast segmentation of filaments and membranes in micrographs and tomograms with TARDIS. BioRXiv.
- *Full citation information available through