a pipeline of tools to generate robust open mesh surfaces from voxel segmentations of biological membranes using the Screened Poisson algorithm, calculate morphological features including curvature and membrane-membrane distance using pycurv's vector voting framework, and tools to convert these morphological quantities into morphometric insights.
Aliases have been created for each of the python scripts so that in place of running
python SCRIPT.pyusers can just run
InstallationUse the following command to install this title with the CLI client:
$ sbgrid-cli install surface-morphometrics