Supported Applications

Surface Morphometrics Toolkit

  • Description

    a pipeline of tools to generate robust open mesh surfaces from voxel segmentations of biological membranes using the Screened Poisson algorithm, calculate morphological features including curvature and membrane-membrane distance using pycurv's vector voting framework, and tools to convert these morphological quantities into morphometric insights.

  • Usage Notes

    Aliases have been created for each of the python scripts so that in place of running python SCRIPT.py users can just run SCRIPT.py.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install surface-morphometrics Copy to clipboard