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Supported Applications

SuperFold

  • Description

    a pipeline that uses data obtained from ShapeMapper to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.

  • Usage

    To list all executables provided by SuperFold, run: $ sbgrid-list superfold Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install superfold Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    N. A. Siegfried, S. Busan, G. M. Rice, J. A. Nelson, and K. M. Weeks. 2014. RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP). Nature Methods. 11(9): 959-965.


    • *Full citation information available through

  • Keywords

    Structure Visualization & Analysis

  • Default Versions

    Linux 64:  1.0 (3.1 MB)
    OS X INTEL:  1.0 (525.7 KB)

  • Developers

    Greggory M Rice, Julie A.E. Nelson, Kevin M Weeks, Nathan A Siegfried, Steven Busan

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