Supported Applications


  • Description

    a pipeline that uses data obtained from ShapeMapper to model RNA secondary structures, including pseudoknots; identify de novo regions with well-defined and stable structures; and visualize most probable and alternative helices.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install superfold Copy to clipboard
  • Primary Citation*

    N. A. Siegfried, S. Busan, G. M. Rice, J. A. Nelson, and K. M. Weeks. 2014. RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP). Nature Methods. 11(9): 959-965.

    • *Full citation information available through