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Supported Applications

SPIDER

  • Description

    (System for Processing Image Data from Electron microscopy and Related fields) a large image processing suite for electron microscopy.

  • Usage

    To list all executables provided by SPIDER, run: $ sbgrid-list spider Copy to clipboard

  • Usage Notes

    Start the vncserver & vncviewer

    vncserver :5 -cc 3 -depth 8 -localhost -geometry 1252x934
    vncviewer :5

    When the viewer window closes, the vncserver will be killed


    vncserver -kill :5
    To reset the password remove the .vnc directory from your HOME directory.

    The OSX build is a test build of the port. If there are any problems please let us know so that we can correct them immediately.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install spider Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    T. Shaikh, H. Gao, W. Baxter, F. Asturias, N. Boisset, A. Leith, and J. Frank. 2008. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat Protoc. 3: 1941-1974.


    • *Full citation information available through

  • Keywords

    Electron Microscopy

  • Default Versions

    Linux 64:  26.06 (1.1 GB)
    OS X INTEL:  22.09 (1.9 GB)

  • Other Versions

      Linux 64:

      13.0 (105.8 MB) , 15.06 (133.9 MB) , 17.05 (87.5 MB) , 18.15 (99.8 MB) , 19.04 (105.7 MB) , 20.12 (159.4 MB) , 21.11 (1.3 GB) , 22.10 (1.4 GB) , 23.03 (1.4 GB) , 24.01 (1.1 GB) , 8.02 (8.7 MB) , 8.03 (135.1 MB)

    • OS X INTEL:

      13.0 (30.8 MB) , 14.18 (45.8 MB) , 15.10 (48.7 MB) , 16.04 (28.6 MB) , 18.15 (29.5 MB) , 19.04 (29.6 MB) , 20.12 (288.9 MB) , 21.11 (1.2 GB)
    • Common files size: 569.8 MB

  • Developers

    ArDean Leith, Joachim Frank

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