Supported Applications


  • Description

    an R package that provides functions for inferring continuous, branching lineage structures in low-dimensional data. Designed to model developmental trajectories in single-cell RNA sequencing data and serve as a component in an analysis pipeline after dimensionality reduction and clustering, Slingshot is flexible enough to handle arbitrarily many branching events and allows for the incorporation of prior knowledge through supervised graph construction.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install slingshot Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    K. Street, D. Risso, R. B. Fletcher, D. Das, J. Ngai, N. Yosef, E. Purdom, and S. Dudoit. 2018. Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics. BMC Genomics. 19(1): 477.

    • *Full citation information available through

  • Keywords

    scRNA-Seq Analysis

  • Default Versions

    Linux 64:  1.3.2 (1.3 KB)
    OS X INTEL:  1.3.2 (1.1 KB)