Supported Applications
ShapeMapper2
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Description
Mutational profiling (MaP) has become perhaps the most accurate and certainly most direct way of reading out chemical modifications in nucleic acids. ShapeMapper 2 is a completely rewritten version of our software for reading out the results of an RNA chemical probing experiment by massively parallel sequencing. ShapeMapper 2 integrates careful handling of all classes of adduct-induced sequence changes, sequence variant correction, basecall quality filters, and quality-control warnings to now identify RNA adduct sites as accurately as achieved by careful manual analysis of electrophoresis data, the prior highest-accuracy standard.
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install shapemapper2
Available operating systems: Linux 64
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Keywords
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Default Versions
Linux 64:  2.1.3 (1.2 GB)