Supported Applications


  • Description

    Mutational profiling (MaP) has become perhaps the most accurate and certainly most direct way of reading out chemical modifications in nucleic acids. ShapeMapper 2 is a completely rewritten version of our software for reading out the results of an RNA chemical probing experiment by massively parallel sequencing. ShapeMapper 2 integrates careful handling of all classes of adduct-induced sequence changes, sequence variant correction, basecall quality filters, and quality-control warnings to now identify RNA adduct sites as accurately as achieved by careful manual analysis of electrophoresis data, the prior highest-accuracy standard.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install shapemapper2 Copy to clipboard Available operating systems: Linux 64
  • Keywords


  • Default Versions

    Linux 64:  2.1.3 (1.2 GB)