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Supported Applications

ShapeMapper

  • Description

    a tool that converts raw sequencing files into mutational profiles, creates SHAPE reactivity plots, and provides extensive diagnostic information useful for experiment analysis and troubleshooting.

  • Usage

    To list all executables provided by ShapeMapper, run: $ sbgrid-list shapemapper Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install shapemapper Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    N. A. Siegfried, S. Busan, G. M. Rice, J. A. Nelson, and K. M. Weeks. 2014. RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP). Nature Methods. 11(9): 959-965.


    • *Full citation information available through

  • Keywords

    Other

  • Default Versions

    Linux 64:  1.2 (428.6 KB)
    OS X INTEL:  1.2 (483.6 KB)

  • Developers

    Nathan A Siegfried, Steven Busan, Julie A.E. Nelson, Kevin M Weeks, Greggory M Rice

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