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Supported Applications


  • Description

    a suite of programs for sequence alignment: 1) aln: Pairwise alignment of biological sequences supporting spliced alignment procedures; 2) swg: locally aligns a pair of DNA or protein sequences by Smith-Waterman-Gotoh algorithm; 3) prrn: global multiple alignment of a set of protein or DNA sequences by doubly-nested iterative refinement method; 4) phyln: UPGMA or NJ method to make a phylogenetic tree from a multiple alignment. 5) makmdm: constructs binary PAM matrices.

  • Usage

    To list all executables provided by SCC, run: $ sbgrid-list scc Copy to clipboard
  • Usage Notes

    makmdm: Must be run once before the first run of aln, swg or prrn.

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install scc Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Keywords


  • Default Versions

    Linux 64:  3.0 (3.1 MB)
    OS X INTEL:  3.0 (1.9 MB)

  • Developers

    Oasmu Gotoh