Supported Applications

SCC

Description

a suite of programs for sequence alignment: 1) aln: Pairwise alignment of biological sequences supporting spliced alignment procedures; 2) swg: locally aligns a pair of DNA or protein sequences by Smith-Waterman-Gotoh algorithm; 3) prrn: global multiple alignment of a set of protein or DNA sequences by doubly-nested iterative refinement method; 4) phyln: UPGMA or NJ method to make a phylogenetic tree from a multiple alignment. 5) makmdm: constructs binary PAM matrices.
Usage
To list all executables provided by SCC, run: $ sbgrid-list scc
Usage Notes

makmdm: Must be run once before the first run of aln, swg or prrn.
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install scc Available operating systems: Linux 64, OS X INTEL