a suite of programs for sequence alignment: 1) aln: Pairwise alignment of biological sequences supporting spliced alignment procedures; 2) swg: locally aligns a pair of DNA or protein sequences by Smith-Waterman-Gotoh algorithm; 3) prrn: global multiple alignment of a set of protein or DNA sequences by doubly-nested iterative refinement method; 4) phyln: UPGMA or NJ method to make a phylogenetic tree from a multiple alignment. 5) makmdm: constructs binary PAM matrices.
makmdm: Must be run once before the first run of aln, swg or prrn.
InstallationUse the following command to install this title with the CLI client:
$ sbgrid install scc