Supported Applications


  • Description

    a suite of programs for sequence alignment including: aln, swg, prrn, phyln and makmdm.

    aln: Pairwise alignment of biological sequences supporting spliced alignment procedures.

    swg: locally aligns a pair of DNA or protein sequences by Smith-Waterman-Gotoh algorithm. Currently spliced alignment is not supported. Profile version is very slow.

    prrn: global multiple alignment of a set of protein or DNA sequences by doubly nested iterative refinement method.

    phyln: UPGMA or NJ method to make a phylogenetic tree from a multiple alignment.

    makmdm: constructs binary PAM matrices. Must be run once before the first run of aln, swg or prrn.

  • Keywords


  • Default Versions

    Linux 64:  3.0
    OS X INTEL:  3.0

  • Other Available Versions

      Linux 32:

  • Developers

    Oasmu Gotoh.