Supported Applications


  • Description

    (Sequence Alignment and Modeling system) a collection of tools for creating, refining, and using linear hidden Markov models for biological sequence analysis.

  • Primary Citation*

    R. Hughey and A. Krogh. 1996. Hidden Markov models for sequence analysis: extension and analysis of the basic method. Comput Appl Biosci. 12(2): 95-107.

    • *Full citation information available through

  • Default Versions

    Linux 64:  3.5
    OS X INTEL:  3.5

  • Other Available Versions

      Linux 32:

      3.5, 3.4, 2.2.1
  • Developers

    Anders Krogh, Richard Hughey, SAM Developer Group, Kevin Karplus.