Supported Applications
RNA Framework
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Description
a modular toolkit developed to deal with RNA structure probing and post-transcriptional modifications mapping high-throughput data. Toolkit will help with automatic reference transcriptome creation, automatic reads preprocessing (adapter clipping and trimming) and mapping, scoring and data normalization, and accurate RNA folding prediction by incorporating structural probing data.
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Installation
Use the following command to install this title with the CLI client:$ sbgrid-cli install rna-framework
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
D. Incarnato, F. Neri, F. Anselmi, and S. Oliviero. 2016. RNA structure framework: automated transcriptome-wide reconstruction of RNA secondary structures from high-throughput structure probing data. Bioinformatics. 32(3): 459-461.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  8596c2e (938.7 KB)
OS X INTEL:  8596c2e (938.8 KB) -
Other Versions
Linux 64:
20170111 (649.7 KB) -
OS X INTEL:
20170111 (465.1 KB)
Developers
Incarnato Danny