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RFdiffusion

  • Description

    an open source method for structure generation, with or without conditional information (a motif, target etc). It can perform a whole range of protein design challenges.

  • Usage

    To list all executables provided by RFdiffusion, run: $ sbgrid-list rfdiffusion Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install rfdiffusion Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    J. L. Watson, D. Juergens, N. R. Bennett, B. L. Trippe, J. Yim, H. E. Eisenach, W. Ahern, A. J. Borst, R. J. Ragotte, L. F. Milles, B. I. M. Wicky, N. Hanikel, S. J. Pellock, A. Courbet, W. Sheffler, J. Wang, P. Venkatesh, Sappington I, S. V. Torres, A. Lauko, D. Bortoli V, E. Mathieu, S. Ovchinnikov, R. Barzilay, T. S. Jaakkola, F. DiMaio, M. Baek, and D. Baker. 2023. De novo design of protein structure and function with RFdiffusion. Nature.


    • *Full citation information available through

  • Webinars

    De novo design of protein structure and function with RFdiffusion.

    SBGrid webinars are hosted with partial support from the NIH R25 Continuing Education for Structural Biology Mentors #GM151273, in collaboration with Co-PI Jamaine Davis of Meharry Medical College.

    Topic: De novo design of protein structure and function with RFdiffusion.

    Presenter: Brian Trippe, Ph.D., Postdoctoral Fellow, Columbia University.

    Host: Pete Meyer
    Recorded on April 9, 2024

    For more information on RFdiffusion:

    https://sbgrid.org/software/titles/rfdiffusion
    https://github.com/RosettaCommons/RFdiffusion

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