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Supported Applications

ProtSkin

  • Description

    a tool that converts a protein sequence alignment in BLAST, CLUSTAL or MSF format to a property file used to map the sequence conservation onto the structure of a protein using the GRASP program or the MOLMOL program or the PyMOL program. A pseudo-PDB file with the sequence conservation score in place of the temperature factor is also provided, to use with programs such as InsightII (accelrys).

  • Usage

    To list all executables provided by ProtSkin, run: $ sbgrid-list protskin Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ sbgrid-cli install protskin Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    B. Ritter, A. Y. Denisov, J. Philie, C. Deprez, E. C. Tung, K. Gehring, and P. S. McPherson. 2004. Two WXXF-based motifs in NECAPs define the specificity of accessory protein binding to AP-1 and AP-2. EMBO J. 23(19): 3701-3710.


    • *Full citation information available through

  • Keywords

    Visualization

  • Default Versions

    Linux 64:  1.82 (96.5 KB)
    OS X INTEL:  1.82 (95.3 KB)

  • Other Versions

      Linux 64:

      1.68 (92.9 KB)

    • OS X INTEL:

      1.68 (91.7 KB)

  • Developers

    Christophe Deprez

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