Supported Applications

Protomo

Description

a system that includes programs and shell scripts for electron tomography of thin specimens, providing an interactive graphical tool for fast initial alignment of a tilt series, shell scripts for the more time consuming refinement, and some other useful image manipulation utilities.
Usage
To list all executables provided by Protomo, run: $ sbgrid-list protomo
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install protomo Available operating systems: Linux 64
Primary Citation*

H. Winkler and K. A. Taylor. 2013. Marker-free dual-axis tilt series alignment. J Struct Biol. 182(2): 117-124.
(Note: This paper includes newer developments such as dual axis tomography, among others.)

H. Winkler and K. A. Taylor. 2006. Accurate marker-free alignment with simultaneous geometry determination and reconstruction of tilt series in electron tomography. Ultramicroscopy. 106(3): 240-254.
(Note: This paper is the original description of the method.)
- *Full citation information available through