Supported Applications

Protkit

Description

a Python library for structural bioinformatics, protein engineering, and machine learning. It offers tools for file handling, database access, protein representation, structure analysis, property calculation, and geometric operations.
Usage
To list all executables provided by Protkit, run: $ sbgrid-list protkit
Usage Notes

Run with python.protkit or jupyter.protkit
Installation
Use the following command to install this title with the CLI client: $ sbgrid-cli install protkit Available operating systems: Linux 64, OS X INTEL
Citation Note

F. Senekal, L. Bisschoff, M. Nieuwoudt, C. Jardim, D. Sherry, Protkit: A unified toolkit for protein engineering., 2024. URL: https://protkit.silicogenesis.com/.

Keywords

Computational Chemistry, Structure Visualization & Analysis
Default Versions

Linux 64: 0.3.0 (593.7 MB)
OS X INTEL: 0.3.0 (561.1 MB)
Developers

Fred Senekal, Mechiel Nieuwoudt, Dean Sherry, Lionel Bisschoff, Claudio Jardim